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        Module&nbsp;Mrc
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<h1 class="epydoc">Source Code for <a href="Priithon.Mrc-module.html">Module Priithon.Mrc</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno">   1</tt>  <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L2"></a><tt class="py-lineno">   2</tt>  <tt class="py-line"><tt class="py-docstring">MRC file format: refer to</tt> </tt>
<a name="L3"></a><tt class="py-lineno">   3</tt>  <tt class="py-line"><tt class="py-docstring">http://www.msg.ucsf.edu/IVE/IVE4_HTML/IM_ref2.html</tt> </tt>
<a name="L4"></a><tt class="py-lineno">   4</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L5"></a><tt class="py-lineno">   5</tt>  <tt class="py-line"><tt class="py-docstring">Mrc class uses memory mapping (file size limit about 1GB (more or less)</tt> </tt>
<a name="L6"></a><tt class="py-lineno">   6</tt>  <tt class="py-line"><tt class="py-docstring">Mrc2 class section wise file/array I/O</tt> </tt>
<a name="L7"></a><tt class="py-lineno">   7</tt>  <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L8"></a><tt class="py-lineno">   8</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">__future__</tt> <tt class="py-keyword">import</tt> <tt class="py-name">absolute_import</tt> </tt>
<a name="L9"></a><tt class="py-lineno">   9</tt>  <tt class="py-line"> </tt>
<a name="L10"></a><tt class="py-lineno">  10</tt>  <tt class="py-line"><tt class="py-name">__author__</tt>  <tt class="py-op">=</tt> <tt class="py-string">"Sebastian Haase &lt;seb.haase+Priithon@gmail.com&gt;"</tt> </tt>
<a name="L11"></a><tt class="py-lineno">  11</tt>  <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable Priithon.PriShell.__license__=Priithon.PriShell-module.html#__license__,Variable Priithon.__license__=Priithon-module.html#__license__"><a title="Priithon.PriShell.__license__
Priithon.__license__" class="py-name" href="#" onclick="return doclink('link-0', '__license__', 'link-0');">__license__</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"BSD license - see LICENSE file"</tt> </tt>
<a name="L12"></a><tt class="py-lineno">  12</tt>  <tt class="py-line"> </tt>
<a name="L13"></a><tt class="py-lineno">  13</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> <tt class="py-keyword">as</tt> <tt class="py-name">N</tt> </tt>
<a name="L14"></a><tt class="py-lineno">  14</tt>  <tt class="py-line"> </tt>
<a name="bindFile"></a><div id="bindFile-def"><a name="L15"></a><tt class="py-lineno">  15</tt> <a class="py-toggle" href="#" id="bindFile-toggle" onclick="return toggle('bindFile');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#bindFile">bindFile</a><tt class="py-op">(</tt><tt class="py-param">fn</tt><tt class="py-op">,</tt> <tt class="py-param">writable</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="bindFile-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="bindFile-expanded"><a name="L16"></a><tt class="py-lineno">  16</tt>  <tt class="py-line">    <tt class="py-docstring">"""open existing Mrc file</tt> </tt>
<a name="L17"></a><tt class="py-lineno">  17</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L18"></a><tt class="py-lineno">  18</tt>  <tt class="py-line"><tt class="py-docstring">    returns memmaped array</tt> </tt>
<a name="L19"></a><tt class="py-lineno">  19</tt>  <tt class="py-line"><tt class="py-docstring">    array has special 'Mrc' attribute </tt> </tt>
<a name="L20"></a><tt class="py-lineno">  20</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L21"></a><tt class="py-lineno">  21</tt>  <tt class="py-line"> </tt>
<a name="L22"></a><tt class="py-lineno">  22</tt>  <tt class="py-line">    <tt class="py-name">mode</tt> <tt class="py-op">=</tt> <tt class="py-string">'r'</tt> </tt>
<a name="L23"></a><tt class="py-lineno">  23</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-1" class="py-name" targets="Method Priithon.wxAsyncDispatcher.DispatcherConnection.writable()=Priithon.wxAsyncDispatcher.DispatcherConnection-class.html#writable"><a title="Priithon.wxAsyncDispatcher.DispatcherConnection.writable" class="py-name" href="#" onclick="return doclink('link-1', 'writable', 'link-1');">writable</a></tt><tt class="py-op">:</tt> </tt>
<a name="L24"></a><tt class="py-lineno">  24</tt>  <tt class="py-line">        <tt class="py-name">mode</tt> <tt class="py-op">=</tt> <tt class="py-string">'r+'</tt> </tt>
<a name="L25"></a><tt class="py-lineno">  25</tt>  <tt class="py-line">    <tt class="py-name">a</tt> <tt class="py-op">=</tt> <tt id="link-2" class="py-name" targets="Module Priithon.Mrc=Priithon.Mrc-module.html,Class Priithon.Mrc.Mrc=Priithon.Mrc.Mrc-class.html"><a title="Priithon.Mrc
Priithon.Mrc.Mrc" class="py-name" href="#" onclick="return doclink('link-2', 'Mrc', 'link-2');">Mrc</a></tt><tt class="py-op">(</tt><tt class="py-name">fn</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
<a name="L26"></a><tt class="py-lineno">  26</tt>  <tt class="py-line"> </tt>
<a name="L27"></a><tt class="py-lineno">  27</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">a</tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Method Priithon.Mrc.Mrc.data_withMrc()=Priithon.Mrc.Mrc-class.html#data_withMrc"><a title="Priithon.Mrc.Mrc.data_withMrc" class="py-name" href="#" onclick="return doclink('link-3', 'data_withMrc', 'link-3');">data_withMrc</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L28"></a><tt class="py-lineno">  28</tt>  <tt class="py-line"> </tt>
<a name="ndarray_inMrcFile"></a><div id="ndarray_inMrcFile-def"><a name="L29"></a><tt class="py-lineno">  29</tt> <a class="py-toggle" href="#" id="ndarray_inMrcFile-toggle" onclick="return toggle('ndarray_inMrcFile');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Priithon.Mrc.ndarray_inMrcFile-class.html">ndarray_inMrcFile</a><tt class="py-op">(</tt><tt class="py-base-class">N</tt><tt class="py-op">.</tt><tt class="py-base-class">ndarray</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="ndarray_inMrcFile-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="ndarray_inMrcFile-expanded"><a name="ndarray_inMrcFile.__new__"></a><div id="ndarray_inMrcFile.__new__-def"><a name="L30"></a><tt class="py-lineno">  30</tt> <a class="py-toggle" href="#" id="ndarray_inMrcFile.__new__-toggle" onclick="return toggle('ndarray_inMrcFile.__new__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.ndarray_inMrcFile-class.html#__new__">__new__</a><tt class="py-op">(</tt><tt class="py-param">cls</tt><tt class="py-op">,</tt> <tt class="py-param">input_array</tt><tt class="py-op">,</tt> <tt class="py-param">mrcInfo</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="ndarray_inMrcFile.__new__-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="ndarray_inMrcFile.__new__-expanded"><a name="L31"></a><tt class="py-lineno">  31</tt>  <tt class="py-line">        <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">asanyarray</tt><tt class="py-op">(</tt><tt class="py-name">input_array</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Method Priithon.mockNDarray.mockNDarray.view()=Priithon.mockNDarray.mockNDarray-class.html#view,Function Priithon.viewer.view()=Priithon.viewer-module.html#view,Function Priithon.viewer2.view()=Priithon.viewer2-module.html#view"><a title="Priithon.mockNDarray.mockNDarray.view
Priithon.viewer.view
Priithon.viewer2.view" class="py-name" href="#" onclick="return doclink('link-4', 'view', 'link-4');">view</a></tt><tt class="py-op">(</tt><tt class="py-name">cls</tt><tt class="py-op">)</tt> </tt>
<a name="L32"></a><tt class="py-lineno">  32</tt>  <tt class="py-line">        <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name"><a title="Priithon.Mrc
Priithon.Mrc.Mrc" class="py-name" href="#" onclick="return doclink('link-5', 'Mrc', 'link-2');">Mrc</a></tt> <tt class="py-op">=</tt> <tt class="py-name">mrcInfo</tt> </tt>
<a name="L33"></a><tt class="py-lineno">  33</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt> </tt>
</div><a name="L34"></a><tt class="py-lineno">  34</tt>  <tt class="py-line"> </tt>
<a name="ndarray_inMrcFile.__array_finalize__"></a><div id="ndarray_inMrcFile.__array_finalize__-def"><a name="L35"></a><tt class="py-lineno">  35</tt> <a class="py-toggle" href="#" id="ndarray_inMrcFile.__array_finalize__-toggle" onclick="return toggle('ndarray_inMrcFile.__array_finalize__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.ndarray_inMrcFile-class.html#__array_finalize__">__array_finalize__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">obj</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="ndarray_inMrcFile.__array_finalize__-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="ndarray_inMrcFile.__array_finalize__-expanded"><a name="L36"></a><tt class="py-lineno">  36</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">obj</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> <tt class="py-keyword">return</tt> </tt>
<a name="L37"></a><tt class="py-lineno">  37</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name"><a title="Priithon.Mrc
Priithon.Mrc.Mrc" class="py-name" href="#" onclick="return doclink('link-6', 'Mrc', 'link-2');">Mrc</a></tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt class="py-name">obj</tt><tt class="py-op">,</tt> <tt class="py-string">'Mrc'</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
<a name="L38"></a><tt class="py-lineno">  38</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dict__</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method Priithon.plt.wxplt.plot_canvas.update()=Priithon.plt.wxplt.plot_canvas-class.html#update,Method Priithon.plt.wxplt.plot_frame.update()=Priithon.plt.wxplt.plot_frame-class.html#update"><a title="Priithon.plt.wxplt.plot_canvas.update
Priithon.plt.wxplt.plot_frame.update" class="py-name" href="#" onclick="return doclink('link-7', 'update', 'link-7');">update</a></tt><tt class="py-op">(</tt><tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt class="py-name">obj</tt><tt class="py-op">,</tt> <tt class="py-string">"__dict__"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L39"></a><tt class="py-lineno">  39</tt>  <tt class="py-line"> </tt>
<a name="Mrc"></a><div id="Mrc-def"><a name="L40"></a><tt class="py-lineno">  40</tt> <a class="py-toggle" href="#" id="Mrc-toggle" onclick="return toggle('Mrc');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html">Mrc</a><tt class="py-op">:</tt> </tt>
</div><div id="Mrc-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="Mrc-expanded"><a name="Mrc.__init__"></a><div id="Mrc.__init__-def"><a name="L41"></a><tt class="py-lineno">  41</tt> <a class="py-toggle" href="#" id="Mrc.__init__-toggle" onclick="return toggle('Mrc.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">path</tt><tt class="py-op">,</tt> <tt class="py-param">mode</tt><tt class="py-op">=</tt><tt class="py-string">'r'</tt><tt class="py-op">,</tt> <tt class="py-param">extHdrSize</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-param">extHdrNints</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-param">extHdrNfloats</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.__init__-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.__init__-expanded"><a name="L42"></a><tt class="py-lineno">  42</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L43"></a><tt class="py-lineno">  43</tt>  <tt class="py-line"><tt class="py-docstring">        mode can be 'r' or 'r+'</tt> </tt>
<a name="L44"></a><tt class="py-lineno">  44</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L45"></a><tt class="py-lineno">  45</tt>  <tt class="py-line">        <tt class="py-keyword">import</tt> <tt class="py-name">os</tt> </tt>
<a name="L46"></a><tt class="py-lineno">  46</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">path</tt>     <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">abspath</tt><tt class="py-op">(</tt><tt class="py-name">path</tt><tt class="py-op">)</tt> </tt>
<a name="L47"></a><tt class="py-lineno">  47</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">basename</tt><tt class="py-op">(</tt><tt class="py-name">path</tt><tt class="py-op">)</tt> </tt>
<a name="L48"></a><tt class="py-lineno">  48</tt>  <tt class="py-line"> </tt>
<a name="L49"></a><tt class="py-lineno">  49</tt>  <tt class="py-line">        <tt class="py-comment">#self.m</tt> </tt>
<a name="L50"></a><tt class="py-lineno">  50</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.h</tt> </tt>
<a name="L51"></a><tt class="py-lineno">  51</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.hdrArray</tt> </tt>
<a name="L52"></a><tt class="py-lineno">  52</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.hdr = self.hdrArray[0].field</tt> </tt>
<a name="L53"></a><tt class="py-lineno">  53</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.data_offset = = 1024 + self.hdr.next</tt> </tt>
<a name="L54"></a><tt class="py-lineno">  54</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.d</tt> </tt>
<a name="L55"></a><tt class="py-lineno">  55</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self._nzBeforeByteOrder</tt> </tt>
<a name="L56"></a><tt class="py-lineno">  56</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L57"></a><tt class="py-lineno">  57</tt>  <tt class="py-line">        <tt class="py-comment">#self.e  = self.m[1024:self.data_offset]</tt> </tt>
<a name="L58"></a><tt class="py-lineno">  58</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.numInts = self.hdr.NumIntegers</tt> </tt>
<a name="L59"></a><tt class="py-lineno">  59</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.numFloats = self.hdr.NumFloats</tt> </tt>
<a name="L60"></a><tt class="py-lineno">  60</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.extHdrArray</tt> </tt>
<a name="L61"></a><tt class="py-lineno">  61</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.extInts   = self.extHdrArray.field('int')</tt> </tt>
<a name="L62"></a><tt class="py-lineno">  62</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.extFloats = self.extHdrArray.field('float')</tt> </tt>
<a name="L63"></a><tt class="py-lineno">  63</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.data</tt> </tt>
<a name="L64"></a><tt class="py-lineno">  64</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L65"></a><tt class="py-lineno">  65</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">extHdrSize</tt> <tt class="py-keyword">and</tt> <tt class="py-name">extHdrSize</tt> <tt class="py-op">%</tt> <tt class="py-number">1024</tt><tt class="py-op">:</tt> </tt>
<a name="L66"></a><tt class="py-lineno">  66</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"extended header size needs to be integer multiple of 1024"</tt> </tt>
<a name="L67"></a><tt class="py-lineno">  67</tt>  <tt class="py-line">        <tt class="py-comment">#20060818 if not extHdrSize and (extHdrNints or extHdrNfloats):</tt> </tt>
<a name="L68"></a><tt class="py-lineno">  68</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#20060818     raise "extHdrNints and extHdrNfloats must be 0 if no extHdrSize"</tt> </tt>
<a name="L69"></a><tt class="py-lineno">  69</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L70"></a><tt class="py-lineno">  70</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">m</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">memmap</tt><tt class="py-op">(</tt><tt class="py-name">path</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
<a name="L71"></a><tt class="py-lineno">  71</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">m</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">1024</tt><tt class="py-op">]</tt> </tt>
<a name="L72"></a><tt class="py-lineno">  72</tt>  <tt class="py-line">         </tt>
<a name="L73"></a><tt class="py-lineno">  73</tt>  <tt class="py-line">         </tt>
<a name="L74"></a><tt class="py-lineno">  74</tt>  <tt class="py-line">        <tt class="py-comment">#20060818 self._hdrArray = makeHdrArray(self.h)</tt> </tt>
<a name="L75"></a><tt class="py-lineno">  75</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#20060818 self.hdr = implement_hdr( self._hdrArray )</tt> </tt>
<a name="L76"></a><tt class="py-lineno">  76</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt> <tt class="py-op">=</tt> <tt id="link-8" class="py-name" targets="Function Priithon.Mrc.makeHdrArray()=Priithon.Mrc-module.html#makeHdrArray"><a title="Priithon.Mrc.makeHdrArray" class="py-name" href="#" onclick="return doclink('link-8', 'makeHdrArray', 'link-8');">makeHdrArray</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">h</tt><tt class="py-op">)</tt> </tt>
<a name="L77"></a><tt class="py-lineno">  77</tt>  <tt class="py-line">         </tt>
<a name="L78"></a><tt class="py-lineno">  78</tt>  <tt class="py-line">        <tt class="py-name">nzBeforeByteOrder</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L79"></a><tt class="py-lineno">  79</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">nzBeforeByteOrder</tt><tt class="py-op">&lt;</tt><tt class="py-number">0</tt> <tt class="py-keyword">or</tt> \ </tt>
<a name="L80"></a><tt class="py-lineno">  80</tt>  <tt class="py-line">               <tt class="py-name">nzBeforeByteOrder</tt><tt class="py-op">&gt;</tt><tt class="py-number">10000</tt><tt class="py-op">:</tt> </tt>
<a name="L81"></a><tt class="py-lineno">  81</tt>  <tt class="py-line"> </tt>
<a name="L82"></a><tt class="py-lineno">  82</tt>  <tt class="py-line">            <tt class="py-comment">#newbyteorder()</tt> </tt>
<a name="L83"></a><tt class="py-lineno">  83</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">_array</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Variable Priithon.mockNDarray.mockNDarray.dtype=Priithon.mockNDarray.mockNDarray-class.html#dtype"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-9', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">_array</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-10', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">.</tt><tt class="py-name">newbyteorder</tt><tt class="py-op">(</tt><tt class="py-op">)</tt>  </tt>
<a name="L84"></a><tt class="py-lineno">  84</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">isByteSwapped</tt> <tt class="py-op">=</tt> <tt id="link-11" class="py-name" targets="Variable Priithon.wxPyPlot.True=Priithon.wxPyPlot-module.html#True"><a title="Priithon.wxPyPlot.True" class="py-name" href="#" onclick="return doclink('link-11', 'True', 'link-11');">True</a></tt> </tt>
<a name="L85"></a><tt class="py-lineno">  85</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt>     </tt>
<a name="L86"></a><tt class="py-lineno">  86</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">isByteSwapped</tt> <tt class="py-op">=</tt> <tt id="link-12" class="py-name" targets="Variable Priithon.wxPyPlot.False=Priithon.wxPyPlot-module.html#False"><a title="Priithon.wxPyPlot.False" class="py-name" href="#" onclick="return doclink('link-12', 'False', 'link-12');">False</a></tt> </tt>
<a name="L87"></a><tt class="py-lineno">  87</tt>  <tt class="py-line">             </tt>
<a name="L88"></a><tt class="py-lineno">  88</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_offset</tt> <tt class="py-op">=</tt> <tt class="py-number">1024</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt> </tt>
<a name="L89"></a><tt class="py-lineno">  89</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">d</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">m</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_offset</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L90"></a><tt class="py-lineno">  90</tt>  <tt class="py-line"> </tt>
<a name="L91"></a><tt class="py-lineno">  91</tt>  <tt class="py-line"> </tt>
<a name="L92"></a><tt class="py-lineno">  92</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Variable Priithon.mandel.e=Priithon.mandel-module.html#e,Variable Priithon.plt.e=Priithon.plt-module.html#e,Variable Priithon.plt.interface.e=Priithon.plt.interface-module.html#e,Variable Priithon.plt.plot_objects.e=Priithon.plt.plot_objects-module.html#e,Variable Priithon.plt.plot_utility.e=Priithon.plt.plot_utility-module.html#e,Variable Priithon.plt.wxplt.e=Priithon.plt.wxplt-module.html#e"><a title="Priithon.mandel.e
Priithon.plt.e
Priithon.plt.interface.e
Priithon.plt.plot_objects.e
Priithon.plt.plot_utility.e
Priithon.plt.wxplt.e" class="py-name" href="#" onclick="return doclink('link-13', 'e', 'link-13');">e</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">m</tt><tt class="py-op">[</tt><tt class="py-number">1024</tt><tt class="py-op">:</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_offset</tt><tt class="py-op">]</tt> </tt>
<a name="L93"></a><tt class="py-lineno">  93</tt>  <tt class="py-line"> </tt>
<a name="L94"></a><tt class="py-lineno">  94</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Method Priithon.Mrc.Mrc.doDataMap()=Priithon.Mrc.Mrc-class.html#doDataMap"><a title="Priithon.Mrc.Mrc.doDataMap" class="py-name" href="#" onclick="return doclink('link-14', 'doDataMap', 'link-14');">doDataMap</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L95"></a><tt class="py-lineno">  95</tt>  <tt class="py-line"> </tt>
<a name="L96"></a><tt class="py-lineno">  96</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numInts</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumIntegers</tt> </tt>
<a name="L97"></a><tt class="py-lineno">  97</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numFloats</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumFloats</tt> </tt>
<a name="L98"></a><tt class="py-lineno">  98</tt>  <tt class="py-line">         </tt>
<a name="L99"></a><tt class="py-lineno">  99</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numInts</tt> <tt class="py-op">&gt;</tt> <tt class="py-number">0</tt> <tt class="py-keyword">or</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numFloats</tt> <tt class="py-op">&gt;</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L100"></a><tt class="py-lineno"> 100</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Method Priithon.Mrc.Mrc.doExtHdrMap()=Priithon.Mrc.Mrc-class.html#doExtHdrMap"><a title="Priithon.Mrc.Mrc.doExtHdrMap" class="py-name" href="#" onclick="return doclink('link-15', 'doExtHdrMap', 'link-15');">doExtHdrMap</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L101"></a><tt class="py-lineno"> 101</tt>  <tt class="py-line"> </tt>
<a name="L102"></a><tt class="py-lineno"> 102</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L103"></a><tt class="py-lineno"> 103</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extHdrArray</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
</div><a name="L104"></a><tt class="py-lineno"> 104</tt>  <tt class="py-line"> </tt>
<a name="L105"></a><tt class="py-lineno"> 105</tt>  <tt class="py-line">    <tt class="py-comment">## this could prevent garbage collector ... </tt> </tt>
<a name="L106"></a><tt class="py-lineno"> 106</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment"># http://arctrix.com/nas/python/gc/</tt> </tt>
<a name="L107"></a><tt class="py-lineno"> 107</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L108"></a><tt class="py-lineno"> 108</tt>  <tt class="py-line">    <tt class="py-comment"># Circular references which are garbage are detected when the optional cycle detector is enabled (it's on by default), but can only be cleaned up if there are no Python-level __del__() methods involved. Refer to the documentation for the 'gc' module for more information about how __del__() methods are handled by the cycle detector, particularly the description of the garbage value. Notice: [warning] Due to the precarious circumstances under which __del__() methods are invoked, exceptions that occur during their execution are ignored, and a warning is printed to sys.stderr instead. Also, when __del__() is invoked in response to a module being deleted (e.g., when execution of the program is done), other globals referenced by the __del__() method may already have been deleted. For this reason, __del__() methods should do the absolute minimum needed to maintain external invariants.</tt> </tt>
<a name="L109"></a><tt class="py-lineno"> 109</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L110"></a><tt class="py-lineno"> 110</tt>  <tt class="py-line"> </tt>
<a name="L111"></a><tt class="py-lineno"> 111</tt>  <tt class="py-line"> </tt>
<a name="L112"></a><tt class="py-lineno"> 112</tt>  <tt class="py-line"><tt class="py-comment">#   def __del__(self):</tt> </tt>
<a name="L113"></a><tt class="py-lineno"> 113</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#       print "debug: Mrc.__del__ (close()) called !"</tt> </tt>
<a name="L114"></a><tt class="py-lineno"> 114</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#       try:</tt> </tt>
<a name="L115"></a><tt class="py-lineno"> 115</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#           #self.m.close()</tt> </tt>
<a name="L116"></a><tt class="py-lineno"> 116</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#           self.close()</tt> </tt>
<a name="L117"></a><tt class="py-lineno"> 117</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#       except:</tt> </tt>
<a name="L118"></a><tt class="py-lineno"> 118</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#           pass</tt> </tt>
<a name="L119"></a><tt class="py-lineno"> 119</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="Mrc.insertExtHdr"></a><div id="Mrc.insertExtHdr-def"><a name="L120"></a><tt class="py-lineno"> 120</tt> <a class="py-toggle" href="#" id="Mrc.insertExtHdr-toggle" onclick="return toggle('Mrc.insertExtHdr');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#insertExtHdr">insertExtHdr</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">numInts</tt><tt class="py-op">,</tt> <tt class="py-param">numFloats</tt><tt class="py-op">,</tt> <tt class="py-param">nz</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.insertExtHdr-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.insertExtHdr-expanded"><a name="L121"></a><tt class="py-lineno"> 121</tt>  <tt class="py-line">        <tt class="py-docstring">"""20051201 - test failed - data did NOT get shifted my next bytes !!!"""</tt> </tt>
<a name="L122"></a><tt class="py-lineno"> 122</tt>  <tt class="py-line">         </tt>
<a name="L123"></a><tt class="py-lineno"> 123</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">numInts</tt> <tt class="py-op">==</tt> <tt class="py-name">numFloats</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L124"></a><tt class="py-lineno"> 124</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"what ??"</tt> </tt>
<a name="L125"></a><tt class="py-lineno"> 125</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_offset</tt> <tt class="py-op">!=</tt> <tt class="py-number">1024</tt><tt class="py-op">:</tt> </tt>
<a name="L126"></a><tt class="py-lineno"> 126</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"what 2 ??"</tt> </tt>
<a name="L127"></a><tt class="py-lineno"> 127</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt> <tt class="py-op">!=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L128"></a><tt class="py-lineno"> 128</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"what 3 ??"</tt> </tt>
<a name="L129"></a><tt class="py-lineno"> 129</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">nz</tt> <tt class="py-op">&lt;=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L130"></a><tt class="py-lineno"> 130</tt>  <tt class="py-line">            <tt class="py-name">nz</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L131"></a><tt class="py-lineno"> 131</tt>  <tt class="py-line"> </tt>
<a name="L132"></a><tt class="py-lineno"> 132</tt>  <tt class="py-line">        <tt class="py-name">bytes</tt> <tt class="py-op">=</tt> <tt class="py-number">4</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-name">numInts</tt> <tt class="py-op">+</tt> <tt class="py-name">numFloats</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-name">nz</tt> </tt>
<a name="L133"></a><tt class="py-lineno"> 133</tt>  <tt class="py-line">        <tt class="py-name">next</tt> <tt class="py-op">=</tt> <tt class="py-number">1024</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">bytes</tt> <tt class="py-op">%</tt> <tt class="py-number">1024</tt> <tt class="py-op">!=</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">+</tt> <tt class="py-name">bytes</tt> <tt class="py-op">//</tt> <tt class="py-number">1024</tt><tt class="py-op">)</tt> </tt>
<a name="L134"></a><tt class="py-lineno"> 134</tt>  <tt class="py-line"> </tt>
<a name="L135"></a><tt class="py-lineno"> 135</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt>         <tt class="py-op">=</tt> <tt class="py-name">next</tt> </tt>
<a name="L136"></a><tt class="py-lineno"> 136</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumIntegers</tt>  <tt class="py-op">=</tt> <tt class="py-name">numInts</tt> </tt>
<a name="L137"></a><tt class="py-lineno"> 137</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumFloats</tt>    <tt class="py-op">=</tt> <tt class="py-name">numFloats</tt> </tt>
<a name="L138"></a><tt class="py-lineno"> 138</tt>  <tt class="py-line"> </tt>
<a name="L139"></a><tt class="py-lineno"> 139</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numInts</tt>   <tt class="py-op">=</tt> <tt class="py-name">numInts</tt> </tt>
<a name="L140"></a><tt class="py-lineno"> 140</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numFloats</tt> <tt class="py-op">=</tt> <tt class="py-name">numFloats</tt> </tt>
<a name="L141"></a><tt class="py-lineno"> 141</tt>  <tt class="py-line"> </tt>
<a name="L142"></a><tt class="py-lineno"> 142</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_offset</tt> <tt class="py-op">=</tt> <tt class="py-number">1024</tt> <tt class="py-op">+</tt> <tt class="py-name">next</tt> </tt>
<a name="L143"></a><tt class="py-lineno"> 143</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="Priithon.mandel.e
Priithon.plt.e
Priithon.plt.interface.e
Priithon.plt.plot_objects.e
Priithon.plt.plot_utility.e
Priithon.plt.wxplt.e" class="py-name" href="#" onclick="return doclink('link-16', 'e', 'link-13');">e</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">m</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name" targets="Function Priithon.useful.insert()=Priithon.useful-module.html#insert"><a title="Priithon.useful.insert" class="py-name" href="#" onclick="return doclink('link-17', 'insert', 'link-17');">insert</a></tt><tt class="py-op">(</tt><tt class="py-number">1024</tt><tt class="py-op">,</tt> <tt class="py-name">next</tt><tt class="py-op">)</tt> </tt>
<a name="L144"></a><tt class="py-lineno"> 144</tt>  <tt class="py-line">         </tt>
<a name="L145"></a><tt class="py-lineno"> 145</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="Priithon.Mrc.Mrc.doExtHdrMap" class="py-name" href="#" onclick="return doclink('link-18', 'doExtHdrMap', 'link-15');">doExtHdrMap</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L146"></a><tt class="py-lineno"> 146</tt>  <tt class="py-line"> </tt>
<a name="Mrc.doExtHdrMap"></a><div id="Mrc.doExtHdrMap-def"><a name="L147"></a><tt class="py-lineno"> 147</tt> <a class="py-toggle" href="#" id="Mrc.doExtHdrMap-toggle" onclick="return toggle('Mrc.doExtHdrMap');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#doExtHdrMap">doExtHdrMap</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nz</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.doExtHdrMap-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.doExtHdrMap-expanded"><a name="L148"></a><tt class="py-lineno"> 148</tt>  <tt class="py-line">        <tt class="py-docstring">"""maps the extended header space to a recarray</tt> </tt>
<a name="L149"></a><tt class="py-lineno"> 149</tt>  <tt class="py-line"><tt class="py-docstring">        if nz==0: then it maps 'NumSecs' tuples</tt> </tt>
<a name="L150"></a><tt class="py-lineno"> 150</tt>  <tt class="py-line"><tt class="py-docstring">        if nz==-1 then it maps the _maximal_ available space</tt> </tt>
<a name="L151"></a><tt class="py-lineno"> 151</tt>  <tt class="py-line"><tt class="py-docstring">             then self.extHdrArray will likely have more entries then the 'NumSecs'</tt> </tt>
<a name="L152"></a><tt class="py-lineno"> 152</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L153"></a><tt class="py-lineno"> 153</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">nz</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L154"></a><tt class="py-lineno"> 154</tt>  <tt class="py-line">            <tt class="py-name">nz</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L155"></a><tt class="py-lineno"> 155</tt>  <tt class="py-line"> </tt>
<a name="L156"></a><tt class="py-lineno"> 156</tt>  <tt class="py-line">        <tt class="py-name">maxnz</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="Priithon.mandel.e
Priithon.plt.e
Priithon.plt.interface.e
Priithon.plt.plot_objects.e
Priithon.plt.plot_utility.e
Priithon.plt.wxplt.e" class="py-name" href="#" onclick="return doclink('link-19', 'e', 'link-13');">e</a></tt><tt class="py-op">)</tt> <tt class="py-op">/</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numInts</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numFloats</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L157"></a><tt class="py-lineno"> 157</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">nz</tt> <tt class="py-op">&lt;</tt> <tt class="py-number">0</tt> <tt class="py-keyword">or</tt> <tt class="py-name">nz</tt><tt class="py-op">&gt;</tt><tt class="py-name">maxnz</tt><tt class="py-op">:</tt> </tt>
<a name="L158"></a><tt class="py-lineno"> 158</tt>  <tt class="py-line">            <tt class="py-name">nz</tt><tt class="py-op">=</tt><tt class="py-name">maxnz</tt> </tt>
<a name="L159"></a><tt class="py-lineno"> 159</tt>  <tt class="py-line"> </tt>
<a name="L160"></a><tt class="py-lineno"> 160</tt>  <tt class="py-line">        <tt class="py-name">byteorder</tt> <tt class="py-op">=</tt> <tt class="py-string">'='</tt> <tt class="py-comment"># 20070206 self.isByteSwapped and '&gt;' or '&lt;'</tt> </tt>
<a name="L161"></a><tt class="py-lineno"> 161</tt>  <tt class="py-line">        <tt class="py-comment">#         self.extHdrArray = N.rec.frombuffer(self.e, formats="%di4,%df4"%(self.numInts,self.numFloats),</tt> </tt>
<a name="L162"></a><tt class="py-lineno"> 162</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#                                         names='int,float',</tt> </tt>
<a name="L163"></a><tt class="py-lineno"> 163</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#                                         shape=nz,</tt> </tt>
<a name="L164"></a><tt class="py-lineno"> 164</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#                                         byteorder=byteorder)</tt> </tt>
<a name="L165"></a><tt class="py-lineno"> 165</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-name">type_descr</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">(</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt>   <tt class="py-string">"%s%di4"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">byteorder</tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numInts</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L166"></a><tt class="py-lineno"> 166</tt>  <tt class="py-line">                      <tt class="py-op">(</tt><tt class="py-string">"float"</tt><tt class="py-op">,</tt> <tt class="py-string">"%s%df4"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">byteorder</tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numFloats</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
<a name="L167"></a><tt class="py-lineno"> 167</tt>  <tt class="py-line"> </tt>
<a name="L168"></a><tt class="py-lineno"> 168</tt>  <tt class="py-line">        <tt class="py-comment">#self.extHdrArray = self.e.view()</tt> </tt>
<a name="L169"></a><tt class="py-lineno"> 169</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.extHdrArray.__class__ = N.recarray</tt> </tt>
<a name="L170"></a><tt class="py-lineno"> 170</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.extHdrArray.dtype = type_descr</tt> </tt>
<a name="L171"></a><tt class="py-lineno"> 171</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extHdrArray</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">recarray</tt><tt class="py-op">(</tt><tt id="link-20" class="py-name" targets="Variable Priithon.mockNDarray.mockNDarray.shape=Priithon.mockNDarray.mockNDarray-class.html#shape"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-20', 'shape', 'link-20');">shape</a></tt><tt class="py-op">=</tt><tt class="py-name">nz</tt><tt class="py-op">,</tt> <tt id="link-21" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-21', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">=</tt><tt class="py-name">type_descr</tt><tt class="py-op">,</tt> <tt class="py-name">buf</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="Priithon.mandel.e
Priithon.plt.e
Priithon.plt.interface.e
Priithon.plt.plot_objects.e
Priithon.plt.plot_utility.e
Priithon.plt.wxplt.e" class="py-name" href="#" onclick="return doclink('link-22', 'e', 'link-13');">e</a></tt><tt class="py-op">)</tt> </tt>
<a name="L172"></a><tt class="py-lineno"> 172</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">isByteSwapped</tt><tt class="py-op">:</tt> </tt>
<a name="L173"></a><tt class="py-lineno"> 173</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extHdrArray</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">newbyteorder</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L174"></a><tt class="py-lineno"> 174</tt>  <tt class="py-line">         </tt>
<a name="L175"></a><tt class="py-lineno"> 175</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extInts</tt>   <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">field</tt><tt class="py-op">(</tt><tt class="py-string">'int'</tt><tt class="py-op">)</tt> </tt>
<a name="L176"></a><tt class="py-lineno"> 176</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extFloats</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">field</tt><tt class="py-op">(</tt><tt class="py-string">'float'</tt><tt class="py-op">)</tt> </tt>
</div><a name="L177"></a><tt class="py-lineno"> 177</tt>  <tt class="py-line">         </tt>
<a name="Mrc.doDataMap"></a><div id="Mrc.doDataMap-def"><a name="L178"></a><tt class="py-lineno"> 178</tt> <a class="py-toggle" href="#" id="Mrc.doDataMap-toggle" onclick="return toggle('Mrc.doDataMap');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#doDataMap">doDataMap</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.doDataMap-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.doDataMap-expanded"><a name="L179"></a><tt class="py-lineno"> 179</tt>  <tt class="py-line">        <tt id="link-23" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-23', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">=</tt> <tt id="link-24" class="py-name" targets="Function Priithon.Mrc.MrcMode2dtype()=Priithon.Mrc-module.html#MrcMode2dtype"><a title="Priithon.Mrc.MrcMode2dtype" class="py-name" href="#" onclick="return doclink('link-24', 'MrcMode2dtype', 'link-24');">MrcMode2dtype</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">)</tt> </tt>
<a name="L180"></a><tt class="py-lineno"> 180</tt>  <tt class="py-line">        <tt id="link-25" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-25', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt id="link-26" class="py-name" targets="Function Priithon.Mrc.shapeFromHdr()=Priithon.Mrc-module.html#shapeFromHdr"><a title="Priithon.Mrc.shapeFromHdr" class="py-name" href="#" onclick="return doclink('link-26', 'shapeFromHdr', 'link-26');">shapeFromHdr</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">)</tt> </tt>
<a name="L181"></a><tt class="py-lineno"> 181</tt>  <tt class="py-line">                 </tt>
<a name="L182"></a><tt class="py-lineno"> 182</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name" targets="Variable Priithon.viewerRubberbandMode.viewerRubberbandMode.data=Priithon.viewerRubberbandMode.viewerRubberbandMode-class.html#data"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-27', 'data', 'link-27');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">d</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.view
Priithon.viewer.view
Priithon.viewer2.view" class="py-name" href="#" onclick="return doclink('link-28', 'view', 'link-4');">view</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L183"></a><tt class="py-lineno"> 183</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-29', 'data', 'link-27');">data</a></tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-30', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">=</tt> <tt id="link-31" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-31', 'dtype', 'link-9');">dtype</a></tt> </tt>
<a name="L184"></a><tt class="py-lineno"> 184</tt>  <tt class="py-line">        <tt class="py-name">n0</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-32', 'data', 'link-27');">data</a></tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-33', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L185"></a><tt class="py-lineno"> 185</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">n0</tt> <tt class="py-op">!=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt><tt id="link-34" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-34', 'shape', 'link-20');">shape</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt>  <tt class="py-comment"># file contains INCOMPLETE sections</tt> </tt>
<a name="L186"></a><tt class="py-lineno"> 186</tt>  <tt class="py-line">            <tt class="py-name">nPixPerSec</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt><tt id="link-35" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-35', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L187"></a><tt class="py-lineno"> 187</tt>  <tt class="py-line">            <tt class="py-name">s0</tt> <tt class="py-op">=</tt>  <tt class="py-name">n0</tt> <tt class="py-op">//</tt> <tt class="py-name">nPixPerSec</tt> <tt class="py-comment"># //-int-division (rounds down)</tt> </tt>
<a name="L188"></a><tt class="py-lineno"> 188</tt>  <tt class="py-line"> </tt>
<a name="L189"></a><tt class="py-lineno"> 189</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">n0</tt> <tt class="py-op">&gt;</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt><tt id="link-36" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-36', 'shape', 'link-20');">shape</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L190"></a><tt class="py-lineno"> 190</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"** WARNING **: found extra sections in file: %d sections; while shape from header: %s"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">s0</tt><tt class="py-op">,</tt> <tt id="link-37" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-37', 'shape', 'link-20');">shape</a></tt><tt class="py-op">)</tt> </tt>
<a name="L191"></a><tt class="py-lineno"> 191</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L192"></a><tt class="py-lineno"> 192</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"** WARNING **: file truncated to %d sections; while shape from header: %s"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">s0</tt><tt class="py-op">,</tt> <tt id="link-38" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-38', 'shape', 'link-20');">shape</a></tt><tt class="py-op">)</tt> </tt>
<a name="L193"></a><tt class="py-lineno"> 193</tt>  <tt class="py-line"> </tt>
<a name="L194"></a><tt class="py-lineno"> 194</tt>  <tt class="py-line">            <tt id="link-39" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-39', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">s0</tt><tt class="py-op">,</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-40" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-40', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L195"></a><tt class="py-lineno"> 195</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-41', 'data', 'link-27');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-42', 'data', 'link-27');">data</a></tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt><tt id="link-43" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-43', 'shape', 'link-20');">shape</a></tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
<a name="L196"></a><tt class="py-lineno"> 196</tt>  <tt class="py-line"> </tt>
<a name="L197"></a><tt class="py-lineno"> 197</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-44', 'data', 'link-27');">data</a></tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-45', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt id="link-46" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-46', 'shape', 'link-20');">shape</a></tt> </tt>
<a name="L198"></a><tt class="py-lineno"> 198</tt>  <tt class="py-line">             </tt>
<a name="L199"></a><tt class="py-lineno"> 199</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">isByteSwapped</tt><tt class="py-op">:</tt> </tt>
<a name="L200"></a><tt class="py-lineno"> 200</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-47', 'data', 'link-27');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-48', 'data', 'link-27');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">newbyteorder</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L201"></a><tt class="py-lineno"> 201</tt>  <tt class="py-line"> </tt>
<a name="Mrc.setTitle"></a><div id="Mrc.setTitle-def"><a name="L202"></a><tt class="py-lineno"> 202</tt> <a class="py-toggle" href="#" id="Mrc.setTitle-toggle" onclick="return toggle('Mrc.setTitle');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#setTitle">setTitle</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">s</tt><tt class="py-op">,</tt> <tt class="py-param">i</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.setTitle-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.setTitle-expanded"><a name="L203"></a><tt class="py-lineno"> 203</tt>  <tt class="py-line">        <tt class="py-docstring">"""set title i (i==-1 means "append") to s"""</tt> </tt>
<a name="L204"></a><tt class="py-lineno"> 204</tt>  <tt class="py-line">        <tt id="link-49" class="py-name" targets="Method Priithon.Mrc.Mrc.setTitle()=Priithon.Mrc.Mrc-class.html#setTitle,Function Priithon.Mrc.setTitle()=Priithon.Mrc-module.html#setTitle,Method Priithon.wxPyPlot.PlotGraphics.setTitle()=Priithon.wxPyPlot.PlotGraphics-class.html#setTitle"><a title="Priithon.Mrc.Mrc.setTitle
Priithon.Mrc.setTitle
Priithon.wxPyPlot.PlotGraphics.setTitle" class="py-name" href="#" onclick="return doclink('link-49', 'setTitle', 'link-49');">setTitle</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">,</tt> <tt class="py-name">s</tt><tt class="py-op">,</tt> <tt id="link-50" class="py-name" targets="Variable Priithon.viewer.i=Priithon.viewer-module.html#i,Variable Priithon.viewer2.i=Priithon.viewer2-module.html#i,Variable Priithon.viewerCommon.i=Priithon.viewerCommon-module.html#i"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-50', 'i', 'link-50');">i</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L205"></a><tt class="py-lineno"> 205</tt>  <tt class="py-line">         </tt>
<a name="L206"></a><tt class="py-lineno"> 206</tt>  <tt class="py-line">         </tt>
<a name="Mrc.axisOrderStr"></a><div id="Mrc.axisOrderStr-def"><a name="L207"></a><tt class="py-lineno"> 207</tt> <a class="py-toggle" href="#" id="Mrc.axisOrderStr-toggle" onclick="return toggle('Mrc.axisOrderStr');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#axisOrderStr">axisOrderStr</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">onlyLetters</tt><tt class="py-op">=</tt><tt id="link-51" class="py-name"><a title="Priithon.wxPyPlot.True" class="py-name" href="#" onclick="return doclink('link-51', 'True', 'link-11');">True</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.axisOrderStr-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.axisOrderStr-expanded"><a name="L208"></a><tt class="py-lineno"> 208</tt>  <tt class="py-line">        <tt class="py-docstring">"""return string indicating meaning of shape dimensions</tt> </tt>
<a name="L209"></a><tt class="py-lineno"> 209</tt>  <tt class="py-line"><tt class="py-docstring">           </tt> </tt>
<a name="L210"></a><tt class="py-lineno"> 210</tt>  <tt class="py-line"><tt class="py-docstring">           ZTW   &lt;- non-interleaved</tt> </tt>
<a name="L211"></a><tt class="py-lineno"> 211</tt>  <tt class="py-line"><tt class="py-docstring">           WZT   &lt;- OM1 ( easy on stage)</tt> </tt>
<a name="L212"></a><tt class="py-lineno"> 212</tt>  <tt class="py-line"><tt class="py-docstring">           ZWT   &lt;- added by API (used at all ??)</tt> </tt>
<a name="L213"></a><tt class="py-lineno"> 213</tt>  <tt class="py-line"><tt class="py-docstring">           ^</tt> </tt>
<a name="L214"></a><tt class="py-lineno"> 214</tt>  <tt class="py-line"><tt class="py-docstring">           |</tt> </tt>
<a name="L215"></a><tt class="py-lineno"> 215</tt>  <tt class="py-line"><tt class="py-docstring">           +--- first letter 'fastest'</tt> </tt>
<a name="L216"></a><tt class="py-lineno"> 216</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L217"></a><tt class="py-lineno"> 217</tt>  <tt class="py-line"><tt class="py-docstring">        fixme: possibly wrong when doDataMap found bad file-size</tt> </tt>
<a name="L218"></a><tt class="py-lineno"> 218</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L219"></a><tt class="py-lineno"> 219</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt id="link-52" class="py-name" targets="Method Priithon.Mrc.Mrc.axisOrderStr()=Priithon.Mrc.Mrc-class.html#axisOrderStr,Function Priithon.Mrc.axisOrderStr()=Priithon.Mrc-module.html#axisOrderStr"><a title="Priithon.Mrc.Mrc.axisOrderStr
Priithon.Mrc.axisOrderStr" class="py-name" href="#" onclick="return doclink('link-52', 'axisOrderStr', 'link-52');">axisOrderStr</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">,</tt> <tt class="py-name">onlyLetters</tt><tt class="py-op">)</tt> </tt>
</div><a name="L220"></a><tt class="py-lineno"> 220</tt>  <tt class="py-line"> </tt>
<a name="Mrc.looksOK"></a><div id="Mrc.looksOK-def"><a name="L221"></a><tt class="py-lineno"> 221</tt> <a class="py-toggle" href="#" id="Mrc.looksOK-toggle" onclick="return toggle('Mrc.looksOK');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#looksOK">looksOK</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">verbose</tt><tt class="py-op">=</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.looksOK-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.looksOK-expanded"><a name="L222"></a><tt class="py-lineno"> 222</tt>  <tt class="py-line">        <tt class="py-docstring">"""do some basic checks like filesize, ..."""</tt> </tt>
<a name="L223"></a><tt class="py-lineno"> 223</tt>  <tt class="py-line">        <tt class="py-comment"># print "TODO"</tt> </tt>
<a name="L224"></a><tt class="py-lineno"> 224</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt id="link-53" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-53', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-54', 'data', 'link-27');">data</a></tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-55', 'shape', 'link-20');">shape</a></tt> </tt>
<a name="L225"></a><tt class="py-lineno"> 225</tt>  <tt class="py-line">        <tt class="py-name">b</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-56', 'data', 'link-27');">data</a></tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-57', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">.</tt><tt class="py-name">itemsize</tt> </tt>
<a name="L226"></a><tt class="py-lineno"> 226</tt>  <tt class="py-line">        <tt class="py-name">eb</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt> <tt id="link-58" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-58', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-name">b</tt> </tt>
<a name="L227"></a><tt class="py-lineno"> 227</tt>  <tt class="py-line">        <tt class="py-name">ab</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">d</tt><tt class="py-op">)</tt> </tt>
<a name="L228"></a><tt class="py-lineno"> 228</tt>  <tt class="py-line">        <tt class="py-name">secb</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt> <tt id="link-59" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-59', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-name">b</tt> </tt>
<a name="L229"></a><tt class="py-lineno"> 229</tt>  <tt class="py-line"> </tt>
<a name="L230"></a><tt class="py-lineno"> 230</tt>  <tt class="py-line">        <tt class="py-name">anSecs</tt> <tt class="py-op">=</tt> <tt class="py-name">ab</tt> <tt class="py-op">/</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">secb</tt><tt class="py-op">)</tt> </tt>
<a name="L231"></a><tt class="py-lineno"> 231</tt>  <tt class="py-line">        <tt class="py-name">enSecs</tt> <tt class="py-op">=</tt> <tt class="py-name">eb</tt> <tt class="py-op">/</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">secb</tt><tt class="py-op">)</tt> </tt>
<a name="L232"></a><tt class="py-lineno"> 232</tt>  <tt class="py-line"> </tt>
<a name="L233"></a><tt class="py-lineno"> 233</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">verbose</tt> <tt class="py-op">&gt;=</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L234"></a><tt class="py-lineno"> 234</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"expected total data bytes:"</tt><tt class="py-op">,</tt> <tt class="py-name">eb</tt> </tt>
<a name="L235"></a><tt class="py-lineno"> 235</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"data bytes in file       :"</tt><tt class="py-op">,</tt> <tt class="py-name">ab</tt> </tt>
<a name="L236"></a><tt class="py-lineno"> 236</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"expected total secs:"</tt><tt class="py-op">,</tt> <tt class="py-name">enSecs</tt> </tt>
<a name="L237"></a><tt class="py-lineno"> 237</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"file has total secs:"</tt><tt class="py-op">,</tt> <tt class="py-name">anSecs</tt> </tt>
<a name="L238"></a><tt class="py-lineno"> 238</tt>  <tt class="py-line">         </tt>
<a name="L239"></a><tt class="py-lineno"> 239</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">eb</tt><tt class="py-op">==</tt><tt class="py-name">ab</tt><tt class="py-op">:</tt> </tt>
<a name="L240"></a><tt class="py-lineno"> 240</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">verbose</tt> <tt class="py-op">&gt;=</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
<a name="L241"></a><tt class="py-lineno"> 241</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"OK"</tt> </tt>
<a name="L242"></a><tt class="py-lineno"> 242</tt>  <tt class="py-line">            <tt class="py-keyword">return</tt> <tt class="py-number">1</tt> </tt>
<a name="L243"></a><tt class="py-lineno"> 243</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">eb</tt><tt class="py-op">&lt;</tt><tt class="py-name">ab</tt><tt class="py-op">:</tt> </tt>
<a name="L244"></a><tt class="py-lineno"> 244</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">verbose</tt> <tt class="py-op">&gt;=</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L245"></a><tt class="py-lineno"> 245</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"* we have %.2f more (hidden) section in file"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> <tt class="py-name">anSecs</tt><tt class="py-op">-</tt><tt class="py-name">enSecs</tt> <tt class="py-op">)</tt> </tt>
<a name="L246"></a><tt class="py-lineno"> 246</tt>  <tt class="py-line">            <tt class="py-keyword">return</tt> <tt class="py-number">0</tt> </tt>
<a name="L247"></a><tt class="py-lineno"> 247</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L248"></a><tt class="py-lineno"> 248</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">verbose</tt> <tt class="py-op">&gt;=</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L249"></a><tt class="py-lineno"> 249</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"* file MISSES %.2f sections "</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> <tt class="py-name">enSecs</tt><tt class="py-op">-</tt><tt class="py-name">anSecs</tt> <tt class="py-op">)</tt> </tt>
<a name="L250"></a><tt class="py-lineno"> 250</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"PLEASE SET shape to "</tt><tt class="py-op">,</tt> <tt class="py-name">anSecs</tt><tt class="py-op">,</tt> <tt class="py-string">"sections !!! "</tt> </tt>
<a name="L251"></a><tt class="py-lineno"> 251</tt>  <tt class="py-line">            <tt class="py-keyword">return</tt> <tt class="py-number">0</tt> </tt>
</div><a name="L252"></a><tt class="py-lineno"> 252</tt>  <tt class="py-line">             </tt>
<a name="L253"></a><tt class="py-lineno"> 253</tt>  <tt class="py-line"> </tt>
<a name="Mrc.info"></a><div id="Mrc.info-def"><a name="L254"></a><tt class="py-lineno"> 254</tt> <a class="py-toggle" href="#" id="Mrc.info-toggle" onclick="return toggle('Mrc.info');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#info">info</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.info-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.info-expanded"><a name="L255"></a><tt class="py-lineno"> 255</tt>  <tt class="py-line">        <tt class="py-docstring">"""print useful information from header"""</tt> </tt>
<a name="L256"></a><tt class="py-lineno"> 256</tt>  <tt class="py-line"> </tt>
<a name="L257"></a><tt class="py-lineno"> 257</tt>  <tt class="py-line">        <tt id="link-60" class="py-name" targets="Function Priithon.Mrc.hdrInfo()=Priithon.Mrc-module.html#hdrInfo"><a title="Priithon.Mrc.hdrInfo" class="py-name" href="#" onclick="return doclink('link-60', 'hdrInfo', 'link-60');">hdrInfo</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">)</tt> </tt>
</div><a name="L258"></a><tt class="py-lineno"> 258</tt>  <tt class="py-line"> </tt>
<a name="L259"></a><tt class="py-lineno"> 259</tt>  <tt class="py-line"> </tt>
<a name="Mrc.data_withMrc"></a><div id="Mrc.data_withMrc-def"><a name="L260"></a><tt class="py-lineno"> 260</tt> <a class="py-toggle" href="#" id="Mrc.data_withMrc-toggle" onclick="return toggle('Mrc.data_withMrc');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#data_withMrc">data_withMrc</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.data_withMrc-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.data_withMrc-expanded"><a name="L261"></a><tt class="py-lineno"> 261</tt>  <tt class="py-line">        <tt class="py-docstring">"""use this to get 'spiffed up' array"""</tt> </tt>
<a name="L262"></a><tt class="py-lineno"> 262</tt>  <tt class="py-line"> </tt>
<a name="L263"></a><tt class="py-lineno"> 263</tt>  <tt class="py-line">        <tt class="py-keyword">import</tt> <tt class="py-name">weakref</tt> </tt>
<a name="L264"></a><tt class="py-lineno"> 264</tt>  <tt class="py-line">        <tt class="py-comment">#NOT-WORKING:  self.data.Mrc = weakref.proxy( self )</tt> </tt>
<a name="L265"></a><tt class="py-lineno"> 265</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L266"></a><tt class="py-lineno"> 266</tt>  <tt class="py-line">        <tt class="py-string">'''</tt> </tt>
<a name="L267"></a><tt class="py-lineno"> 267</tt>  <tt class="py-line"><tt class="py-string">        #20071123: http://www.scipy.org/Subclasses</tt> </tt>
<a name="L268"></a><tt class="py-lineno"> 268</tt>  <tt class="py-line"><tt class="py-string">        class ndarray_inMrcFile(N.ndarray):</tt> </tt>
<a name="L269"></a><tt class="py-lineno"> 269</tt>  <tt class="py-line"><tt class="py-string">            def __array_finalize__(self,obj):</tt> </tt>
<a name="L270"></a><tt class="py-lineno"> 270</tt>  <tt class="py-line"><tt class="py-string">                self.Mrc = getattr(obj, 'Mrc', None)</tt> </tt>
<a name="L271"></a><tt class="py-lineno"> 271</tt>  <tt class="py-line"><tt class="py-string">#         class ndarray_inMrcFile(N.memmap):</tt> </tt>
<a name="L272"></a><tt class="py-lineno"> 272</tt>  <tt class="py-line"><tt class="py-string">#             pass</tt> </tt>
<a name="L273"></a><tt class="py-lineno"> 273</tt>  <tt class="py-line"><tt class="py-string">#             def __new__(subtype, data, info=None, dtype=None, copy=False):</tt> </tt>
<a name="L274"></a><tt class="py-lineno"> 274</tt>  <tt class="py-line"><tt class="py-string">#                 #subarr = N.array(data, dtype=dtype, copy=copy)</tt> </tt>
<a name="L275"></a><tt class="py-lineno"> 275</tt>  <tt class="py-line"><tt class="py-string">#                 #subarr = subarr.view(subtype)</tt> </tt>
<a name="L276"></a><tt class="py-lineno"> 276</tt>  <tt class="py-line"><tt class="py-string">#                 subarr = data.view(subtype)</tt> </tt>
<a name="L277"></a><tt class="py-lineno"> 277</tt>  <tt class="py-line"><tt class="py-string">#                 return subarr</tt> </tt>
<a name="L278"></a><tt class="py-lineno"> 278</tt>  <tt class="py-line"><tt class="py-string"></tt> </tt>
<a name="L279"></a><tt class="py-lineno"> 279</tt>  <tt class="py-line"><tt class="py-string">#             def __array_finalize__(self,obj):</tt> </tt>
<a name="L280"></a><tt class="py-lineno"> 280</tt>  <tt class="py-line"><tt class="py-string">#                 self.Mrc = getattr(obj, 'Mrc', None)</tt> </tt>
<a name="L281"></a><tt class="py-lineno"> 281</tt>  <tt class="py-line"><tt class="py-string"></tt> </tt>
<a name="L282"></a><tt class="py-lineno"> 282</tt>  <tt class="py-line"><tt class="py-string">        data = self.data</tt> </tt>
<a name="L283"></a><tt class="py-lineno"> 283</tt>  <tt class="py-line"><tt class="py-string">        data.__class__ = ndarray_inMrcFile</tt> </tt>
<a name="L284"></a><tt class="py-lineno"> 284</tt>  <tt class="py-line"><tt class="py-string">        ddd = weakref.proxy( data )</tt> </tt>
<a name="L285"></a><tt class="py-lineno"> 285</tt>  <tt class="py-line"><tt class="py-string">        self.data = ddd</tt> </tt>
<a name="L286"></a><tt class="py-lineno"> 286</tt>  <tt class="py-line"><tt class="py-string">        data.Mrc = self</tt> </tt>
<a name="L287"></a><tt class="py-lineno"> 287</tt>  <tt class="py-line"><tt class="py-string">        '''</tt> </tt>
<a name="L288"></a><tt class="py-lineno"> 288</tt>  <tt class="py-line">        <tt id="link-61" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-61', 'data', 'link-27');">data</a></tt> <tt class="py-op">=</tt> <tt id="link-62" class="py-name" targets="Class Priithon.Mrc.ndarray_inMrcFile=Priithon.Mrc.ndarray_inMrcFile-class.html"><a title="Priithon.Mrc.ndarray_inMrcFile" class="py-name" href="#" onclick="return doclink('link-62', 'ndarray_inMrcFile', 'link-62');">ndarray_inMrcFile</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-63', 'data', 'link-27');">data</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">)</tt> </tt>
<a name="L289"></a><tt class="py-lineno"> 289</tt>  <tt class="py-line">        <tt id="link-64" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-64', 'data', 'link-27');">data</a></tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="Priithon.Mrc
Priithon.Mrc.Mrc" class="py-name" href="#" onclick="return doclink('link-65', 'Mrc', 'link-2');">Mrc</a></tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-66', 'data', 'link-27');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">weakref</tt><tt class="py-op">.</tt><tt class="py-name">proxy</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-67', 'data', 'link-27');">data</a></tt> <tt class="py-op">)</tt> <tt class="py-comment"># remove circular reference</tt> </tt>
<a name="L290"></a><tt class="py-lineno"> 290</tt>  <tt class="py-line"> </tt>
<a name="L291"></a><tt class="py-lineno"> 291</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt id="link-68" class="py-name"><a title="Priithon.viewerRubberbandMode.viewerRubberbandMode.data" class="py-name" href="#" onclick="return doclink('link-68', 'data', 'link-27');">data</a></tt> </tt>
</div><a name="L292"></a><tt class="py-lineno"> 292</tt>  <tt class="py-line">         </tt>
<a name="Mrc.close"></a><div id="Mrc.close-def"><a name="L293"></a><tt class="py-lineno"> 293</tt> <a class="py-toggle" href="#" id="Mrc.close-toggle" onclick="return toggle('Mrc.close');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc-class.html#close">close</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc.close-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc.close-expanded"><a name="L294"></a><tt class="py-lineno"> 294</tt>  <tt class="py-line">        <tt class="py-comment">#if self.mode == 'w+':</tt> </tt>
<a name="L295"></a><tt class="py-lineno"> 295</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#    self.calcMMM()</tt> </tt>
<a name="L296"></a><tt class="py-lineno"> 296</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">m</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name" targets="Method Priithon.Mrc.Mrc.close()=Priithon.Mrc.Mrc-class.html#close,Method Priithon.Mrc.Mrc2.close()=Priithon.Mrc.Mrc2-class.html#close,Method Priithon.Scientific_IO_TextFile.TextFile.close()=Priithon.Scientific_IO_TextFile.TextFile-class.html#close,Method Priithon.plt.dumbdbm_patched._Database.close()=Priithon.plt.dumbdbm_patched._Database-class.html#close,Function Priithon.plt.interface.close()=Priithon.plt.interface-module.html#close,Method Priithon.readerSPE.File.close()=Priithon.readerSPE.File-class.html#close"><a title="Priithon.Mrc.Mrc.close
Priithon.Mrc.Mrc2.close
Priithon.Scientific_IO_TextFile.TextFile.close
Priithon.plt.dumbdbm_patched._Database.close
Priithon.plt.interface.close
Priithon.readerSPE.File.close" class="py-name" href="#" onclick="return doclink('link-69', 'close', 'link-69');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L297"></a><tt class="py-lineno"> 297</tt>  <tt class="py-line">    <tt class="py-comment">#     def sync(self):</tt> </tt>
<a name="L298"></a><tt class="py-lineno"> 298</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#         self.m.sync()</tt> </tt>
<a name="L299"></a><tt class="py-lineno"> 299</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#     def flush(self):</tt> </tt>
<a name="L300"></a><tt class="py-lineno"> 300</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#         self.m.flush()</tt> </tt>
<a name="L301"></a><tt class="py-lineno"> 301</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L302"></a><tt class="py-lineno"> 302</tt>  <tt class="py-line"> </tt>
<a name="L303"></a><tt class="py-lineno"> 303</tt>  <tt class="py-line"> </tt>
<a name="L304"></a><tt class="py-lineno"> 304</tt>  <tt class="py-line"><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L305"></a><tt class="py-lineno"> 305</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L306"></a><tt class="py-lineno"> 306</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L307"></a><tt class="py-lineno"> 307</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L308"></a><tt class="py-lineno"> 308</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="open"></a><div id="open-def"><a name="L309"></a><tt class="py-lineno"> 309</tt> <a class="py-toggle" href="#" id="open-toggle" onclick="return toggle('open');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#open">open</a><tt class="py-op">(</tt><tt class="py-param">path</tt><tt class="py-op">,</tt> <tt class="py-param">mode</tt><tt class="py-op">=</tt><tt class="py-string">'r'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="open-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="open-expanded"><a name="L310"></a><tt class="py-lineno"> 310</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt id="link-70" class="py-name" targets="Class Priithon.Mrc.Mrc2=Priithon.Mrc.Mrc2-class.html"><a title="Priithon.Mrc.Mrc2" class="py-name" href="#" onclick="return doclink('link-70', 'Mrc2', 'link-70');">Mrc2</a></tt><tt class="py-op">(</tt><tt class="py-name">path</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
</div><a name="L311"></a><tt class="py-lineno"> 311</tt>  <tt class="py-line"> </tt>
<a name="load"></a><div id="load-def"><a name="L312"></a><tt class="py-lineno"> 312</tt> <a class="py-toggle" href="#" id="load-toggle" onclick="return toggle('load');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#load">load</a><tt class="py-op">(</tt><tt class="py-param">fn</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="load-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="load-expanded"><a name="L313"></a><tt class="py-lineno"> 313</tt>  <tt class="py-line">    <tt class="py-docstring">"""return 3D array filled with the data</tt> </tt>
<a name="L314"></a><tt class="py-lineno"> 314</tt>  <tt class="py-line"><tt class="py-docstring">    (non memmap)</tt> </tt>
<a name="L315"></a><tt class="py-lineno"> 315</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L316"></a><tt class="py-lineno"> 316</tt>  <tt class="py-line">    <tt class="py-name">m</tt> <tt class="py-op">=</tt> <tt id="link-71" class="py-name" targets="Function Priithon.Mrc.open()=Priithon.Mrc-module.html#open,Function Priithon.plt.dumb_shelve.open()=Priithon.plt.dumb_shelve-module.html#open,Function Priithon.plt.dumbdbm_patched.open()=Priithon.plt.dumbdbm_patched-module.html#open,Method Priithon.py.buffer.Buffer.open()=Priithon.py.buffer.Buffer-class.html#open"><a title="Priithon.Mrc.open
Priithon.plt.dumb_shelve.open
Priithon.plt.dumbdbm_patched.open
Priithon.py.buffer.Buffer.open" class="py-name" href="#" onclick="return doclink('link-71', 'open', 'link-71');">open</a></tt><tt class="py-op">(</tt><tt class="py-name">fn</tt><tt class="py-op">)</tt> </tt>
<a name="L317"></a><tt class="py-lineno"> 317</tt>  <tt class="py-line">    <tt class="py-name">a</tt> <tt class="py-op">=</tt> <tt class="py-name">m</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name" targets="Method Priithon.Mrc.Mrc2.readStack()=Priithon.Mrc.Mrc2-class.html#readStack"><a title="Priithon.Mrc.Mrc2.readStack" class="py-name" href="#" onclick="return doclink('link-72', 'readStack', 'link-72');">readStack</a></tt><tt class="py-op">(</tt><tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L318"></a><tt class="py-lineno"> 318</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">a</tt> </tt>
</div><a name="L319"></a><tt class="py-lineno"> 319</tt>  <tt class="py-line"> </tt>
<a name="save"></a><div id="save-def"><a name="L320"></a><tt class="py-lineno"> 320</tt> <a class="py-toggle" href="#" id="save-toggle" onclick="return toggle('save');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#save">save</a><tt class="py-op">(</tt><tt class="py-param">a</tt><tt class="py-op">,</tt> <tt class="py-param">fn</tt><tt class="py-op">,</tt> <tt class="py-param">ifExists</tt><tt class="py-op">=</tt><tt class="py-string">'ask'</tt><tt class="py-op">,</tt> <tt class="py-param">zAxisOrder</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L321"></a><tt class="py-lineno"> 321</tt>  <tt class="py-line">         <tt class="py-param">hdr</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-param">hdrEval</tt><tt class="py-op">=</tt><tt class="py-string">''</tt><tt class="py-op">,</tt> </tt>
<a name="L322"></a><tt class="py-lineno"> 322</tt>  <tt class="py-line">         <tt class="py-param">calcMMM</tt><tt class="py-op">=</tt><tt id="link-73" class="py-name"><a title="Priithon.wxPyPlot.True" class="py-name" href="#" onclick="return doclink('link-73', 'True', 'link-11');">True</a></tt><tt class="py-op">,</tt> </tt>
<a name="L323"></a><tt class="py-lineno"> 323</tt>  <tt class="py-line">         <tt class="py-param">extInts</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-param">extFloats</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="save-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="save-expanded"><a name="L324"></a><tt class="py-lineno"> 324</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L325"></a><tt class="py-lineno"> 325</tt>  <tt class="py-line"><tt class="py-docstring">    ifExists shoud be one of</tt> </tt>
<a name="L326"></a><tt class="py-lineno"> 326</tt>  <tt class="py-line"><tt class="py-docstring">       ask</tt> </tt>
<a name="L327"></a><tt class="py-lineno"> 327</tt>  <tt class="py-line"><tt class="py-docstring">       raise</tt> </tt>
<a name="L328"></a><tt class="py-lineno"> 328</tt>  <tt class="py-line"><tt class="py-docstring">       overwrite</tt> </tt>
<a name="L329"></a><tt class="py-lineno"> 329</tt>  <tt class="py-line"><tt class="py-docstring">       skip</tt> </tt>
<a name="L330"></a><tt class="py-lineno"> 330</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L331"></a><tt class="py-lineno"> 331</tt>  <tt class="py-line"><tt class="py-docstring">    (only first letter is checked)</tt> </tt>
<a name="L332"></a><tt class="py-lineno"> 332</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L333"></a><tt class="py-lineno"> 333</tt>  <tt class="py-line"><tt class="py-docstring">     use zAxisOrder if arr.ndim &gt; 3:</tt> </tt>
<a name="L334"></a><tt class="py-lineno"> 334</tt>  <tt class="py-line"><tt class="py-docstring">       zAxisOrder is given in order conform to python(last is fastest)</tt> </tt>
<a name="L335"></a><tt class="py-lineno"> 335</tt>  <tt class="py-line"><tt class="py-docstring">          (spaces,commas,dots,minuses  are ignored)</tt> </tt>
<a name="L336"></a><tt class="py-lineno"> 336</tt>  <tt class="py-line"><tt class="py-docstring">       examples:</tt> </tt>
<a name="L337"></a><tt class="py-lineno"> 337</tt>  <tt class="py-line"><tt class="py-docstring">          4D: time,z,y,x          --&gt;  zAxisOrder= 't z'</tt> </tt>
<a name="L338"></a><tt class="py-lineno"> 338</tt>  <tt class="py-line"><tt class="py-docstring">          5D: time, wave, z,y,x   --&gt;  zAxisOrder= 't,z,w'</tt> </tt>
<a name="L339"></a><tt class="py-lineno"> 339</tt>  <tt class="py-line"><tt class="py-docstring">       refer to Mrc spec 'ImgSequence' (interleaved or not)</tt> </tt>
<a name="L340"></a><tt class="py-lineno"> 340</tt>  <tt class="py-line"><tt class="py-docstring">       zAxisOrder None means:</tt> </tt>
<a name="L341"></a><tt class="py-lineno"> 341</tt>  <tt class="py-line"><tt class="py-docstring">          3D: 'z'</tt> </tt>
<a name="L342"></a><tt class="py-lineno"> 342</tt>  <tt class="py-line"><tt class="py-docstring">          4D: 'tz'</tt> </tt>
<a name="L343"></a><tt class="py-lineno"> 343</tt>  <tt class="py-line"><tt class="py-docstring">          5D: 'tzw'</tt> </tt>
<a name="L344"></a><tt class="py-lineno"> 344</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L345"></a><tt class="py-lineno"> 345</tt>  <tt class="py-line"><tt class="py-docstring">    if hdr is not None:  copy all fields(except 'Num',...)</tt> </tt>
<a name="L346"></a><tt class="py-lineno"> 346</tt>  <tt class="py-line"><tt class="py-docstring">    if calcMMM:  calculate min,max,mean of data set and set hdr field</tt> </tt>
<a name="L347"></a><tt class="py-lineno"> 347</tt>  <tt class="py-line"><tt class="py-docstring">    if hdrEval:  exec this string ("hdr" refers to the 'new' header)</tt> </tt>
<a name="L348"></a><tt class="py-lineno"> 348</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L349"></a><tt class="py-lineno"> 349</tt>  <tt class="py-line"><tt class="py-docstring">    TODO: not implemented yet, extInts=None, extFloats=None</tt> </tt>
<a name="L350"></a><tt class="py-lineno"> 350</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L351"></a><tt class="py-lineno"> 351</tt>  <tt class="py-line">    <tt class="py-keyword">import</tt> <tt class="py-name">os</tt> </tt>
<a name="L352"></a><tt class="py-lineno"> 352</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">exists</tt><tt class="py-op">(</tt><tt class="py-name">fn</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L353"></a><tt class="py-lineno"> 353</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">ifExists</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'o'</tt><tt class="py-op">:</tt> </tt>
<a name="L354"></a><tt class="py-lineno"> 354</tt>  <tt class="py-line">            <tt class="py-keyword">pass</tt> </tt>
<a name="L355"></a><tt class="py-lineno"> 355</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">ifExists</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'a'</tt><tt class="py-op">:</tt> </tt>
<a name="L356"></a><tt class="py-lineno"> 356</tt>  <tt class="py-line">            <tt class="py-name">yes</tt> <tt class="py-op">=</tt> <tt id="link-74" class="py-name" targets="Method Priithon.py.shell.Shell.raw_input()=Priithon.py.shell.Shell-class.html#raw_input"><a title="Priithon.py.shell.Shell.raw_input" class="py-name" href="#" onclick="return doclink('link-74', 'raw_input', 'link-74');">raw_input</a></tt><tt class="py-op">(</tt><tt class="py-string">"overwrite?"</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">lower</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-string">'y'</tt> </tt>
<a name="L357"></a><tt class="py-lineno"> 357</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">yes</tt><tt class="py-op">:</tt> </tt>
<a name="L358"></a><tt class="py-lineno"> 358</tt>  <tt class="py-line">                <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">,</tt> <tt class="py-string">"not overwriting existing file '%s'"</tt><tt class="py-op">%</tt><tt class="py-name">fn</tt> </tt>
<a name="L359"></a><tt class="py-lineno"> 359</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">ifExists</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'s'</tt><tt class="py-op">:</tt> </tt>
<a name="L360"></a><tt class="py-lineno"> 360</tt>  <tt class="py-line">            <tt class="py-keyword">return</tt> </tt>
<a name="L361"></a><tt class="py-lineno"> 361</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L362"></a><tt class="py-lineno"> 362</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">,</tt> <tt class="py-string">"not overwriting existing file '%s'"</tt><tt class="py-op">%</tt><tt class="py-name">fn</tt> </tt>
<a name="L363"></a><tt class="py-lineno"> 363</tt>  <tt class="py-line">             </tt>
<a name="L364"></a><tt class="py-lineno"> 364</tt>  <tt class="py-line">    <tt class="py-name">m</tt> <tt class="py-op">=</tt> <tt id="link-75" class="py-name"><a title="Priithon.Mrc.Mrc2" class="py-name" href="#" onclick="return doclink('link-75', 'Mrc2', 'link-70');">Mrc2</a></tt><tt class="py-op">(</tt><tt class="py-name">fn</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-string">'w'</tt><tt class="py-op">)</tt> </tt>
<a name="L365"></a><tt class="py-lineno"> 365</tt>  <tt class="py-line"> </tt>
<a name="L366"></a><tt class="py-lineno"> 366</tt>  <tt class="py-line">    <tt class="py-comment">#if a.ndim &lt; 3:</tt> </tt>
<a name="L367"></a><tt class="py-lineno"> 367</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#    a=a.view()</tt> </tt>
<a name="L368"></a><tt class="py-lineno"> 368</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#    a.shape = (1,)*(3-a.ndim) + a.shape</tt> </tt>
<a name="L369"></a><tt class="py-lineno"> 369</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L370"></a><tt class="py-lineno"> 370</tt>  <tt class="py-line">    <tt class="py-name">m</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name" targets="Method Priithon.Mrc.Mrc2.initHdrForArr()=Priithon.Mrc.Mrc2-class.html#initHdrForArr"><a title="Priithon.Mrc.Mrc2.initHdrForArr" class="py-name" href="#" onclick="return doclink('link-76', 'initHdrForArr', 'link-76');">initHdrForArr</a></tt><tt class="py-op">(</tt><tt class="py-name">a</tt><tt class="py-op">,</tt> <tt class="py-name">zAxisOrder</tt><tt class="py-op">)</tt> </tt>
<a name="L371"></a><tt class="py-lineno"> 371</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">hdr</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L372"></a><tt class="py-lineno"> 372</tt>  <tt class="py-line">        <tt id="link-77" class="py-name" targets="Function Priithon.Mrc.initHdrArrayFrom()=Priithon.Mrc-module.html#initHdrArrayFrom"><a title="Priithon.Mrc.initHdrArrayFrom" class="py-name" href="#" onclick="return doclink('link-77', 'initHdrArrayFrom', 'link-77');">initHdrArrayFrom</a></tt><tt class="py-op">(</tt><tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">)</tt> </tt>
<a name="L373"></a><tt class="py-lineno"> 373</tt>  <tt class="py-line"> </tt>
<a name="L374"></a><tt class="py-lineno"> 374</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">calcMMM</tt><tt class="py-op">:</tt> </tt>
<a name="L375"></a><tt class="py-lineno"> 375</tt>  <tt class="py-line">        <tt class="py-keyword">from</tt> <tt class="py-op">.</tt> <tt class="py-keyword">import</tt> <tt id="link-78" class="py-name" targets="Module Priithon.useful=Priithon.useful-module.html"><a title="Priithon.useful" class="py-name" href="#" onclick="return doclink('link-78', 'useful', 'link-78');">useful</a></tt> <tt class="py-keyword">as</tt> <tt class="py-name">U</tt> </tt>
<a name="L376"></a><tt class="py-lineno"> 376</tt>  <tt class="py-line">        <tt class="py-name">wAxis</tt> <tt class="py-op">=</tt> <tt id="link-79" class="py-name"><a title="Priithon.Mrc.Mrc.axisOrderStr
Priithon.Mrc.axisOrderStr" class="py-name" href="#" onclick="return doclink('link-79', 'axisOrderStr', 'link-52');">axisOrderStr</a></tt><tt class="py-op">(</tt><tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'w'</tt><tt class="py-op">)</tt> </tt>
<a name="L377"></a><tt class="py-lineno"> 377</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">wAxis</tt> <tt class="py-op">&lt;</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L378"></a><tt class="py-lineno"> 378</tt>  <tt class="py-line">            <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mmm1</tt> <tt class="py-op">=</tt> <tt class="py-name">U</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name" targets="Function Priithon.useful.mmm()=Priithon.useful-module.html#mmm"><a title="Priithon.useful.mmm" class="py-name" href="#" onclick="return doclink('link-80', 'mmm', 'link-80');">mmm</a></tt><tt class="py-op">(</tt><tt class="py-name">a</tt><tt class="py-op">)</tt> </tt>
<a name="L379"></a><tt class="py-lineno"> 379</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L380"></a><tt class="py-lineno"> 380</tt>  <tt class="py-line">            <tt class="py-name">nw</tt> <tt class="py-op">=</tt> <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> </tt>
<a name="L381"></a><tt class="py-lineno"> 381</tt>  <tt class="py-line">            <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mmm1</tt> <tt class="py-op">=</tt> <tt class="py-name">U</tt><tt class="py-op">.</tt><tt id="link-81" class="py-name"><a title="Priithon.useful.mmm" class="py-name" href="#" onclick="return doclink('link-81', 'mmm', 'link-80');">mmm</a></tt><tt class="py-op">(</tt><tt class="py-name">a</tt><tt class="py-op">.</tt><tt class="py-name">take</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">wAxis</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L382"></a><tt class="py-lineno"> 382</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">&gt;=</tt><tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
<a name="L383"></a><tt class="py-lineno"> 383</tt>  <tt class="py-line">                <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm2</tt> <tt class="py-op">=</tt> <tt class="py-name">U</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name" targets="Function Priithon.useful.mm()=Priithon.useful-module.html#mm"><a title="Priithon.useful.mm" class="py-name" href="#" onclick="return doclink('link-82', 'mm', 'link-82');">mm</a></tt><tt class="py-op">(</tt><tt class="py-name">a</tt><tt class="py-op">.</tt><tt class="py-name">take</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">wAxis</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L384"></a><tt class="py-lineno"> 384</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">&gt;=</tt><tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L385"></a><tt class="py-lineno"> 385</tt>  <tt class="py-line">                <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm3</tt> <tt class="py-op">=</tt> <tt class="py-name">U</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="Priithon.useful.mm" class="py-name" href="#" onclick="return doclink('link-83', 'mm', 'link-82');">mm</a></tt><tt class="py-op">(</tt><tt class="py-name">a</tt><tt class="py-op">.</tt><tt class="py-name">take</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">wAxis</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L386"></a><tt class="py-lineno"> 386</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">&gt;=</tt><tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
<a name="L387"></a><tt class="py-lineno"> 387</tt>  <tt class="py-line">                <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm4</tt> <tt class="py-op">=</tt> <tt class="py-name">U</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="Priithon.useful.mm" class="py-name" href="#" onclick="return doclink('link-84', 'mm', 'link-82');">mm</a></tt><tt class="py-op">(</tt><tt class="py-name">a</tt><tt class="py-op">.</tt><tt class="py-name">take</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">3</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">wAxis</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L388"></a><tt class="py-lineno"> 388</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">&gt;=</tt><tt class="py-number">5</tt><tt class="py-op">:</tt> </tt>
<a name="L389"></a><tt class="py-lineno"> 389</tt>  <tt class="py-line">                <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm5</tt> <tt class="py-op">=</tt> <tt class="py-name">U</tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="Priithon.useful.mm" class="py-name" href="#" onclick="return doclink('link-85', 'mm', 'link-82');">mm</a></tt><tt class="py-op">(</tt><tt class="py-name">a</tt><tt class="py-op">.</tt><tt class="py-name">take</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">wAxis</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L390"></a><tt class="py-lineno"> 390</tt>  <tt class="py-line"> </tt>
<a name="L391"></a><tt class="py-lineno"> 391</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">extInts</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt> <tt class="py-keyword">or</tt>  <tt class="py-name">extFloats</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L392"></a><tt class="py-lineno"> 392</tt>  <tt class="py-line">        <tt class="py-keyword">raise</tt> <tt class="py-name">NotImplementedError</tt><tt class="py-op">,</tt> <tt class="py-string">"todo: implement ext hdr"</tt> </tt>
<a name="L393"></a><tt class="py-lineno"> 393</tt>  <tt class="py-line"> </tt>
<a name="L394"></a><tt class="py-lineno"> 394</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">hdrEval</tt><tt class="py-op">:</tt> </tt>
<a name="L395"></a><tt class="py-lineno"> 395</tt>  <tt class="py-line">        <tt class="py-keyword">import</tt> <tt class="py-name">sys</tt> </tt>
<a name="L396"></a><tt class="py-lineno"> 396</tt>  <tt class="py-line">        <tt class="py-name">fr</tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">_getframe</tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L397"></a><tt class="py-lineno"> 397</tt>  <tt class="py-line">        <tt class="py-name">loc</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-string">'hdr'</tt> <tt class="py-op">:</tt> <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt> <tt class="py-op">}</tt> </tt>
<a name="L398"></a><tt class="py-lineno"> 398</tt>  <tt class="py-line">        <tt class="py-name">loc</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="Priithon.plt.wxplt.plot_canvas.update
Priithon.plt.wxplt.plot_frame.update" class="py-name" href="#" onclick="return doclink('link-86', 'update', 'link-7');">update</a></tt><tt class="py-op">(</tt><tt class="py-name">fr</tt><tt class="py-op">.</tt><tt class="py-name">f_locals</tt><tt class="py-op">)</tt> </tt>
<a name="L399"></a><tt class="py-lineno"> 399</tt>  <tt class="py-line">        <tt class="py-name">glo</tt> <tt class="py-op">=</tt> <tt class="py-name">fr</tt><tt class="py-op">.</tt><tt class="py-name">f_globals</tt> </tt>
<a name="L400"></a><tt class="py-lineno"> 400</tt>  <tt class="py-line">        <tt class="py-keyword">exec</tt> <tt class="py-name">hdrEval</tt> <tt class="py-keyword">in</tt> <tt class="py-name">loc</tt><tt class="py-op">,</tt> <tt class="py-name">glo</tt> </tt>
<a name="L401"></a><tt class="py-lineno"> 401</tt>  <tt class="py-line">    <tt class="py-name">m</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name" targets="Method Priithon.Mrc.Mrc2.writeHeader()=Priithon.Mrc.Mrc2-class.html#writeHeader"><a title="Priithon.Mrc.Mrc2.writeHeader" class="py-name" href="#" onclick="return doclink('link-87', 'writeHeader', 'link-87');">writeHeader</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L402"></a><tt class="py-lineno"> 402</tt>  <tt class="py-line">    <tt class="py-name">m</tt><tt class="py-op">.</tt><tt id="link-88" class="py-name" targets="Method Priithon.Mrc.Mrc2.writeStack()=Priithon.Mrc.Mrc2-class.html#writeStack"><a title="Priithon.Mrc.Mrc2.writeStack" class="py-name" href="#" onclick="return doclink('link-88', 'writeStack', 'link-88');">writeStack</a></tt><tt class="py-op">(</tt><tt class="py-name">a</tt><tt class="py-op">)</tt> </tt>
<a name="L403"></a><tt class="py-lineno"> 403</tt>  <tt class="py-line">    <tt class="py-name">m</tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="Priithon.Mrc.Mrc.close
Priithon.Mrc.Mrc2.close
Priithon.Scientific_IO_TextFile.TextFile.close
Priithon.plt.dumbdbm_patched._Database.close
Priithon.plt.interface.close
Priithon.readerSPE.File.close" class="py-name" href="#" onclick="return doclink('link-89', 'close', 'link-69');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L404"></a><tt class="py-lineno"> 404</tt>  <tt class="py-line"> </tt>
<a name="L405"></a><tt class="py-lineno"> 405</tt>  <tt class="py-line"> </tt>
<a name="L406"></a><tt class="py-lineno"> 406</tt>  <tt class="py-line"> </tt>
<a name="L407"></a><tt class="py-lineno"> 407</tt>  <tt class="py-line"><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L408"></a><tt class="py-lineno"> 408</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L409"></a><tt class="py-lineno"> 409</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L410"></a><tt class="py-lineno"> 410</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L411"></a><tt class="py-lineno"> 411</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="Mrc2"></a><div id="Mrc2-def"><a name="L412"></a><tt class="py-lineno"> 412</tt> <a class="py-toggle" href="#" id="Mrc2-toggle" onclick="return toggle('Mrc2');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html">Mrc2</a><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="Mrc2-expanded"><a name="L413"></a><tt class="py-lineno"> 413</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L414"></a><tt class="py-lineno"> 414</tt>  <tt class="py-line"><tt class="py-docstring">    this class is for NON-memmapped access of Mrc files</tt> </tt>
<a name="L415"></a><tt class="py-lineno"> 415</tt>  <tt class="py-line"><tt class="py-docstring">    sections can be read and written on a by-need basis</tt> </tt>
<a name="L416"></a><tt class="py-lineno"> 416</tt>  <tt class="py-line"><tt class="py-docstring">    the Mrc2 object itself only handles</tt> </tt>
<a name="L417"></a><tt class="py-lineno"> 417</tt>  <tt class="py-line"><tt class="py-docstring">       the file-object and</tt> </tt>
<a name="L418"></a><tt class="py-lineno"> 418</tt>  <tt class="py-line"><tt class="py-docstring">       the header and</tt> </tt>
<a name="L419"></a><tt class="py-lineno"> 419</tt>  <tt class="py-line"><tt class="py-docstring">       extended header data</tt> </tt>
<a name="L420"></a><tt class="py-lineno"> 420</tt>  <tt class="py-line"><tt class="py-docstring">       BUT NOT ANY image data</tt> </tt>
<a name="L421"></a><tt class="py-lineno"> 421</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L422"></a><tt class="py-lineno"> 422</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L423"></a><tt class="py-lineno"> 423</tt>  <tt class="py-line"><tt class="py-docstring">    mode indicates how the file is to be opened: </tt> </tt>
<a name="L424"></a><tt class="py-lineno"> 424</tt>  <tt class="py-line"><tt class="py-docstring">        'r' for reading, </tt> </tt>
<a name="L425"></a><tt class="py-lineno"> 425</tt>  <tt class="py-line"><tt class="py-docstring">        'w' for writing (truncating an existing file), </tt> </tt>
<a name="L426"></a><tt class="py-lineno"> 426</tt>  <tt class="py-line"><tt class="py-docstring">        ['a' does not really make sense here]</tt> </tt>
<a name="L427"></a><tt class="py-lineno"> 427</tt>  <tt class="py-line"><tt class="py-docstring">        Modes 'r+', 'w+' [and 'a+'] open the file for updating (note that 'w+' truncates the file). </tt> </tt>
<a name="L428"></a><tt class="py-lineno"> 428</tt>  <tt class="py-line"><tt class="py-docstring">     ('b' for binary mode, is implicitely appended)</tt> </tt>
<a name="L429"></a><tt class="py-lineno"> 429</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="Mrc2.__init__"></a><div id="Mrc2.__init__-def"><a name="L430"></a><tt class="py-lineno"> 430</tt> <a class="py-toggle" href="#" id="Mrc2.__init__-toggle" onclick="return toggle('Mrc2.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">path</tt><tt class="py-op">,</tt> <tt class="py-param">mode</tt><tt class="py-op">=</tt><tt class="py-string">'r'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.__init__-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.__init__-expanded"><a name="L431"></a><tt class="py-lineno"> 431</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L432"></a><tt class="py-lineno"> 432</tt>  <tt class="py-line"><tt class="py-docstring">        path is filename</tt> </tt>
<a name="L433"></a><tt class="py-lineno"> 433</tt>  <tt class="py-line"><tt class="py-docstring">        mode: same as for Python's open function</tt> </tt>
<a name="L434"></a><tt class="py-lineno"> 434</tt>  <tt class="py-line"><tt class="py-docstring">            ('b' is implicitely appended !)</tt> </tt>
<a name="L435"></a><tt class="py-lineno"> 435</tt>  <tt class="py-line"><tt class="py-docstring">            'r'   read-only</tt> </tt>
<a name="L436"></a><tt class="py-lineno"> 436</tt>  <tt class="py-line"><tt class="py-docstring">            'r+'  read-write</tt> </tt>
<a name="L437"></a><tt class="py-lineno"> 437</tt>  <tt class="py-line"><tt class="py-docstring">            'w'   write - erases old file !!</tt> </tt>
<a name="L438"></a><tt class="py-lineno"> 438</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L439"></a><tt class="py-lineno"> 439</tt>  <tt class="py-line">        <tt class="py-keyword">import</tt> <tt class="py-name">os</tt><tt class="py-op">,</tt> <tt class="py-name">__builtin__</tt> </tt>
<a name="L440"></a><tt class="py-lineno"> 440</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt> <tt class="py-op">=</tt> <tt class="py-name">__builtin__</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="Priithon.Mrc.open
Priithon.plt.dumb_shelve.open
Priithon.plt.dumbdbm_patched.open
Priithon.py.buffer.Buffer.open" class="py-name" href="#" onclick="return doclink('link-90', 'open', 'link-71');">open</a></tt><tt class="py-op">(</tt><tt class="py-name">path</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">+</tt><tt class="py-string">'b'</tt><tt class="py-op">)</tt> </tt>
<a name="L441"></a><tt class="py-lineno"> 441</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_path</tt> <tt class="py-op">=</tt> <tt class="py-name">path</tt> </tt>
<a name="L442"></a><tt class="py-lineno"> 442</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_name</tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">basename</tt><tt class="py-op">(</tt><tt class="py-name">path</tt><tt class="py-op">)</tt> </tt>
<a name="L443"></a><tt class="py-lineno"> 443</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_mode</tt> <tt class="py-op">=</tt> <tt class="py-name">mode</tt> </tt>
<a name="L444"></a><tt class="py-lineno"> 444</tt>  <tt class="py-line"> </tt>
<a name="L445"></a><tt class="py-lineno"> 445</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_hdrSize</tt>    <tt class="py-op">=</tt> <tt class="py-number">1024</tt> </tt>
<a name="L446"></a><tt class="py-lineno"> 446</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dataOffset</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_hdrSize</tt> </tt>
<a name="L447"></a><tt class="py-lineno"> 447</tt>  <tt class="py-line"> </tt>
<a name="L448"></a><tt class="py-lineno"> 448</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_fileIsByteSwapped</tt> <tt class="py-op">=</tt> <tt id="link-91" class="py-name"><a title="Priithon.wxPyPlot.False" class="py-name" href="#" onclick="return doclink('link-91', 'False', 'link-12');">False</a></tt> </tt>
<a name="L449"></a><tt class="py-lineno"> 449</tt>  <tt class="py-line">         </tt>
<a name="L450"></a><tt class="py-lineno"> 450</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">mode</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">'r'</tt><tt class="py-op">,</tt> <tt class="py-string">'r+'</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> </tt>
<a name="L451"></a><tt class="py-lineno"> 451</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name" targets="Method Priithon.Mrc.Mrc2._initFromExistingFile()=Priithon.Mrc.Mrc2-class.html#_initFromExistingFile"><a title="Priithon.Mrc.Mrc2._initFromExistingFile" class="py-name" href="#" onclick="return doclink('link-92', '_initFromExistingFile', 'link-92');">_initFromExistingFile</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L452"></a><tt class="py-lineno"> 452</tt>  <tt class="py-line"> </tt>
<a name="L453"></a><tt class="py-lineno"> 453</tt>  <tt class="py-line">            <tt class="py-comment">#111 - now we will have real extHdr support</tt> </tt>
<a name="L454"></a><tt class="py-lineno"> 454</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-comment">#111 self._dataOffset += self.hdr.next #HACK</tt> </tt>
<a name="L455"></a><tt class="py-lineno"> 455</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-93" class="py-name" targets="Method Priithon.Mrc.Mrc2.seekSec()=Priithon.Mrc.Mrc2-class.html#seekSec"><a title="Priithon.Mrc.Mrc2.seekSec" class="py-name" href="#" onclick="return doclink('link-93', 'seekSec', 'link-93');">seekSec</a></tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
<a name="L456"></a><tt class="py-lineno"> 456</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L457"></a><tt class="py-lineno"> 457</tt>  <tt class="py-line">            <tt class="py-comment">#20060818 self._hdrArray = makeHdrArray()</tt> </tt>
<a name="L458"></a><tt class="py-lineno"> 458</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-comment">#20060818 self.hdr = implement_hdr( self._hdrArray )</tt> </tt>
<a name="L459"></a><tt class="py-lineno"> 459</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt> <tt class="py-op">=</tt> <tt id="link-94" class="py-name"><a title="Priithon.Mrc.makeHdrArray" class="py-name" href="#" onclick="return doclink('link-94', 'makeHdrArray', 'link-8');">makeHdrArray</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L460"></a><tt class="py-lineno"> 460</tt>  <tt class="py-line"> </tt>
<a name="L461"></a><tt class="py-lineno"> 461</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape</tt>   <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L462"></a><tt class="py-lineno"> 462</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape2d</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L463"></a><tt class="py-lineno"> 463</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dtype</tt>   <tt class="py-op">=</tt> <tt class="py-name">None</tt>    <tt class="py-comment"># scalar data type of pixels</tt> </tt>
<a name="L464"></a><tt class="py-lineno"> 464</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_secByteSize</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
</div><a name="L465"></a><tt class="py-lineno"> 465</tt>  <tt class="py-line"> </tt>
<a name="L466"></a><tt class="py-lineno"> 466</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.initHdrForArr"></a><div id="Mrc2.initHdrForArr-def"><a name="L467"></a><tt class="py-lineno"> 467</tt> <a class="py-toggle" href="#" id="Mrc2.initHdrForArr-toggle" onclick="return toggle('Mrc2.initHdrForArr');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#initHdrForArr">initHdrForArr</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">arr</tt><tt class="py-op">,</tt> <tt class="py-param">zAxisOrder</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.initHdrForArr-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.initHdrForArr-expanded"><a name="L468"></a><tt class="py-lineno"> 468</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L469"></a><tt class="py-lineno"> 469</tt>  <tt class="py-line"><tt class="py-docstring">        use zAxisOrder if arr.ndim &gt; 3:</tt> </tt>
<a name="L470"></a><tt class="py-lineno"> 470</tt>  <tt class="py-line"><tt class="py-docstring">          zAxisOrder is given in order conform to python(last is fastest)</tt> </tt>
<a name="L471"></a><tt class="py-lineno"> 471</tt>  <tt class="py-line"><tt class="py-docstring">             (spaces,commas,dots,minuses  are ignored)</tt> </tt>
<a name="L472"></a><tt class="py-lineno"> 472</tt>  <tt class="py-line"><tt class="py-docstring">          examples:</tt> </tt>
<a name="L473"></a><tt class="py-lineno"> 473</tt>  <tt class="py-line"><tt class="py-docstring">             4D: time,z,y,x          --&gt;  zAxisOrder= 't z'</tt> </tt>
<a name="L474"></a><tt class="py-lineno"> 474</tt>  <tt class="py-line"><tt class="py-docstring">             5D: time, wave, z,y,x   --&gt;  zAxisOrder= 't,z,w'</tt> </tt>
<a name="L475"></a><tt class="py-lineno"> 475</tt>  <tt class="py-line"><tt class="py-docstring">          refer to Mrc spec 'ImgSequence' (interleaved or not)</tt> </tt>
<a name="L476"></a><tt class="py-lineno"> 476</tt>  <tt class="py-line"><tt class="py-docstring">          zAxisOrder None means:</tt> </tt>
<a name="L477"></a><tt class="py-lineno"> 477</tt>  <tt class="py-line"><tt class="py-docstring">             3D: 'z'</tt> </tt>
<a name="L478"></a><tt class="py-lineno"> 478</tt>  <tt class="py-line"><tt class="py-docstring">             4D: 'tz'</tt> </tt>
<a name="L479"></a><tt class="py-lineno"> 479</tt>  <tt class="py-line"><tt class="py-docstring">             5D: 'tzw'</tt> </tt>
<a name="L480"></a><tt class="py-lineno"> 480</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L481"></a><tt class="py-lineno"> 481</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">zAxisOrder</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L482"></a><tt class="py-lineno"> 482</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt>   <tt id="link-95" class="py-name" targets="Function Priithon.useful.arr()=Priithon.useful-module.html#arr"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-95', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-96" class="py-name" targets="Variable Priithon.mockNDarray.mockNDarray.ndim=Priithon.mockNDarray.mockNDarray-class.html#ndim"><a title="Priithon.mockNDarray.mockNDarray.ndim" class="py-name" href="#" onclick="return doclink('link-96', 'ndim', 'link-96');">ndim</a></tt> <tt class="py-op">==</tt><tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L483"></a><tt class="py-lineno"> 483</tt>  <tt class="py-line">                <tt class="py-name">zAxisOrder</tt> <tt class="py-op">=</tt> <tt class="py-string">'z'</tt> </tt>
<a name="L484"></a><tt class="py-lineno"> 484</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt id="link-97" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-97', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-98" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.ndim" class="py-name" href="#" onclick="return doclink('link-98', 'ndim', 'link-96');">ndim</a></tt> <tt class="py-op">==</tt><tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
<a name="L485"></a><tt class="py-lineno"> 485</tt>  <tt class="py-line">                <tt class="py-name">zAxisOrder</tt> <tt class="py-op">=</tt> <tt class="py-string">'tz'</tt> </tt>
<a name="L486"></a><tt class="py-lineno"> 486</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L487"></a><tt class="py-lineno"> 487</tt>  <tt class="py-line">                <tt class="py-name">zAxisOrder</tt> <tt class="py-op">=</tt> <tt class="py-string">'tzw'</tt> </tt>
<a name="L488"></a><tt class="py-lineno"> 488</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L489"></a><tt class="py-lineno"> 489</tt>  <tt class="py-line">            <tt class="py-keyword">import</tt> <tt id="link-99" class="py-name" targets="Module Priithon.string=Priithon.string-module.html"><a title="Priithon.string" class="py-name" href="#" onclick="return doclink('link-99', 'string', 'link-99');">string</a></tt> </tt>
<a name="L490"></a><tt class="py-lineno"> 490</tt>  <tt class="py-line">            <tt class="py-comment"># remove delimiter characters '-., '</tt> </tt>
<a name="L491"></a><tt class="py-lineno"> 491</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-name">zAxisOrder</tt> <tt class="py-op">=</tt> <tt class="py-name">zAxisOrder</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name" targets="Method Priithon.plt.plot_utility.box_object.translate()=Priithon.plt.plot_utility.box_object-class.html#translate"><a title="Priithon.plt.plot_utility.box_object.translate" class="py-name" href="#" onclick="return doclink('link-100', 'translate', 'link-100');">translate</a></tt><tt class="py-op">(</tt> </tt>
<a name="L492"></a><tt class="py-lineno"> 492</tt>  <tt class="py-line">                <tt id="link-101" class="py-name"><a title="Priithon.string" class="py-name" href="#" onclick="return doclink('link-101', 'string', 'link-99');">string</a></tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-name">chr</tt><tt class="py-op">(</tt><tt id="link-102" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-102', 'i', 'link-50');">i</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">for</tt> <tt id="link-103" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-103', 'i', 'link-50');">i</a></tt> <tt class="py-keyword">in</tt> <tt id="link-104" class="py-name" targets="Method Priithon.plt.plot_objects.axis_object.range()=Priithon.plt.plot_objects.axis_object-class.html#range"><a title="Priithon.plt.plot_objects.axis_object.range" class="py-name" href="#" onclick="return doclink('link-104', 'range', 'link-104');">range</a></tt><tt class="py-op">(</tt><tt class="py-number">256</tt><tt class="py-op">)</tt><tt class="py-op">]</tt><tt class="py-op">,</tt><tt class="py-string">''</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">'-., '</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">lower</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L493"></a><tt class="py-lineno"> 493</tt>  <tt class="py-line"> </tt>
<a name="L494"></a><tt class="py-lineno"> 494</tt>  <tt class="py-line">        <tt class="py-name">mrcmode</tt> <tt class="py-op">=</tt> <tt id="link-105" class="py-name" targets="Function Priithon.Mrc.dtype2MrcMode()=Priithon.Mrc-module.html#dtype2MrcMode"><a title="Priithon.Mrc.dtype2MrcMode" class="py-name" href="#" onclick="return doclink('link-105', 'dtype2MrcMode', 'link-105');">dtype2MrcMode</a></tt><tt class="py-op">(</tt><tt id="link-106" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-106', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-107" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-107', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">.</tt><tt class="py-name">type</tt><tt class="py-op">)</tt> </tt>
<a name="L495"></a><tt class="py-lineno"> 495</tt>  <tt class="py-line">        <tt id="link-108" class="py-name" targets="Function Priithon.Mrc.init_simple()=Priithon.Mrc-module.html#init_simple"><a title="Priithon.Mrc.init_simple" class="py-name" href="#" onclick="return doclink('link-108', 'init_simple', 'link-108');">init_simple</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">,</tt> <tt class="py-name">mrcmode</tt><tt class="py-op">,</tt> <tt id="link-109" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-109', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-110" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-110', 'shape', 'link-20');">shape</a></tt><tt class="py-op">)</tt> </tt>
<a name="L496"></a><tt class="py-lineno"> 496</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt id="link-111" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-111', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-112" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.ndim" class="py-name" href="#" onclick="return doclink('link-112', 'ndim', 'link-96');">ndim</a></tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
<a name="L497"></a><tt class="py-lineno"> 497</tt>  <tt class="py-line">            <tt class="py-keyword">pass</tt> </tt>
<a name="L498"></a><tt class="py-lineno"> 498</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt id="link-113" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-113', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-114" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.ndim" class="py-name" href="#" onclick="return doclink('link-114', 'ndim', 'link-96');">ndim</a></tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L499"></a><tt class="py-lineno"> 499</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt>   <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'z'</tt><tt class="py-op">:</tt> </tt>
<a name="L500"></a><tt class="py-lineno"> 500</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L501"></a><tt class="py-lineno"> 501</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'w'</tt><tt class="py-op">:</tt> </tt>
<a name="L502"></a><tt class="py-lineno"> 502</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L503"></a><tt class="py-lineno"> 503</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> <tt class="py-op">=</tt> <tt id="link-115" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-115', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-116', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">3</tt><tt class="py-op">]</tt> </tt>
<a name="L504"></a><tt class="py-lineno"> 504</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'t'</tt><tt class="py-op">:</tt> </tt>
<a name="L505"></a><tt class="py-lineno"> 505</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L506"></a><tt class="py-lineno"> 506</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt> <tt class="py-op">=</tt> <tt id="link-117" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-117', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-118" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-118', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">3</tt><tt class="py-op">]</tt> </tt>
<a name="L507"></a><tt class="py-lineno"> 507</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L508"></a><tt class="py-lineno"> 508</tt>  <tt class="py-line">                <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"unsupported axis order (%s)"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">zAxisOrder</tt><tt class="py-op">,</tt><tt class="py-op">)</tt> </tt>
<a name="L509"></a><tt class="py-lineno"> 509</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt id="link-119" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-119', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-120" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.ndim" class="py-name" href="#" onclick="return doclink('link-120', 'ndim', 'link-96');">ndim</a></tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
<a name="L510"></a><tt class="py-lineno"> 510</tt>  <tt class="py-line">            <tt class="py-comment">#if   zAxisOrder[:2] == 'zt':</tt> </tt>
<a name="L511"></a><tt class="py-lineno"> 511</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-comment">#    #WRONG !self.hdr.ImgSequence = 2</tt> </tt>
<a name="L512"></a><tt class="py-lineno"> 512</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-comment">#    raise ValueError, "zAxisOrder z slower than t is not supported my Mrc format"</tt> </tt>
<a name="L513"></a><tt class="py-lineno"> 513</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-comment">#    self.hdr.NumTimes = arr.shape[-3]</tt> </tt>
<a name="L514"></a><tt class="py-lineno"> 514</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-keyword">if</tt>   <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'tz'</tt><tt class="py-op">:</tt> </tt>
<a name="L515"></a><tt class="py-lineno"> 515</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L516"></a><tt class="py-lineno"> 516</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt> <tt class="py-op">=</tt> <tt id="link-121" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-121', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-122" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-122', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> </tt>
<a name="L517"></a><tt class="py-lineno"> 517</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'wz'</tt><tt class="py-op">:</tt> </tt>
<a name="L518"></a><tt class="py-lineno"> 518</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L519"></a><tt class="py-lineno"> 519</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> <tt class="py-op">=</tt> <tt id="link-123" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-123', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-124', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> </tt>
<a name="L520"></a><tt class="py-lineno"> 520</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'zw'</tt><tt class="py-op">:</tt> </tt>
<a name="L521"></a><tt class="py-lineno"> 521</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L522"></a><tt class="py-lineno"> 522</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> <tt class="py-op">=</tt> <tt id="link-125" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-125', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-126" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-126', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">3</tt><tt class="py-op">]</tt> </tt>
<a name="L523"></a><tt class="py-lineno"> 523</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L524"></a><tt class="py-lineno"> 524</tt>  <tt class="py-line">                <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"unsupported axis order (%s)"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">zAxisOrder</tt><tt class="py-op">,</tt><tt class="py-op">)</tt> </tt>
<a name="L525"></a><tt class="py-lineno"> 525</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt id="link-127" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-127', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-128" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.ndim" class="py-name" href="#" onclick="return doclink('link-128', 'ndim', 'link-96');">ndim</a></tt> <tt class="py-op">==</tt> <tt class="py-number">5</tt><tt class="py-op">:</tt> </tt>
<a name="L526"></a><tt class="py-lineno"> 526</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt>   <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">3</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'wtz'</tt><tt class="py-op">:</tt> </tt>
<a name="L527"></a><tt class="py-lineno"> 527</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L528"></a><tt class="py-lineno"> 528</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt> <tt class="py-op">=</tt> <tt id="link-129" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-129', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-130', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> </tt>
<a name="L529"></a><tt class="py-lineno"> 529</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> <tt class="py-op">=</tt> <tt id="link-131" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-131', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-132" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-132', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">5</tt><tt class="py-op">]</tt> </tt>
<a name="L530"></a><tt class="py-lineno"> 530</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">3</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'tzw'</tt><tt class="py-op">:</tt> </tt>
<a name="L531"></a><tt class="py-lineno"> 531</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L532"></a><tt class="py-lineno"> 532</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt> <tt class="py-op">=</tt> <tt id="link-133" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-133', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-134" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-134', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">5</tt><tt class="py-op">]</tt> </tt>
<a name="L533"></a><tt class="py-lineno"> 533</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> <tt class="py-op">=</tt> <tt id="link-135" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-135', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-136" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-136', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">3</tt><tt class="py-op">]</tt> </tt>
<a name="L534"></a><tt class="py-lineno"> 534</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt class="py-name">zAxisOrder</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">3</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'twz'</tt><tt class="py-op">:</tt> </tt>
<a name="L535"></a><tt class="py-lineno"> 535</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-number">2</tt> </tt>
<a name="L536"></a><tt class="py-lineno"> 536</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt> <tt class="py-op">=</tt> <tt id="link-137" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-137', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-138" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-138', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">5</tt><tt class="py-op">]</tt> </tt>
<a name="L537"></a><tt class="py-lineno"> 537</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> <tt class="py-op">=</tt> <tt id="link-139" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-139', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-140" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-140', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> </tt>
<a name="L538"></a><tt class="py-lineno"> 538</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L539"></a><tt class="py-lineno"> 539</tt>  <tt class="py-line">                <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"unsupported axis order (%s)"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">zAxisOrder</tt><tt class="py-op">,</tt><tt class="py-op">)</tt> </tt>
<a name="L540"></a><tt class="py-lineno"> 540</tt>  <tt class="py-line"> </tt>
<a name="L541"></a><tt class="py-lineno"> 541</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt>   </tt>
<a name="L542"></a><tt class="py-lineno"> 542</tt>  <tt class="py-line">             <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"unsupported array ndim (%s)"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt id="link-141" class="py-name"><a title="Priithon.useful.arr" class="py-name" href="#" onclick="return doclink('link-141', 'arr', 'link-95');">arr</a></tt><tt class="py-op">.</tt><tt id="link-142" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.ndim" class="py-name" href="#" onclick="return doclink('link-142', 'ndim', 'link-96');">ndim</a></tt><tt class="py-op">,</tt><tt class="py-op">)</tt> </tt>
<a name="L543"></a><tt class="py-lineno"> 543</tt>  <tt class="py-line">          </tt>
<a name="L544"></a><tt class="py-lineno"> 544</tt>  <tt class="py-line"> </tt>
<a name="L545"></a><tt class="py-lineno"> 545</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-143" class="py-name" targets="Method Priithon.Mrc.Mrc2._initWhenHdrArraySet()=Priithon.Mrc.Mrc2-class.html#_initWhenHdrArraySet"><a title="Priithon.Mrc.Mrc2._initWhenHdrArraySet" class="py-name" href="#" onclick="return doclink('link-143', '_initWhenHdrArraySet', 'link-143');">_initWhenHdrArraySet</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L546"></a><tt class="py-lineno"> 546</tt>  <tt class="py-line"> </tt>
<a name="Mrc2._initFromExistingFile"></a><div id="Mrc2._initFromExistingFile-def"><a name="L547"></a><tt class="py-lineno"> 547</tt> <a class="py-toggle" href="#" id="Mrc2._initFromExistingFile-toggle" onclick="return toggle('Mrc2._initFromExistingFile');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#_initFromExistingFile">_initFromExistingFile</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2._initFromExistingFile-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2._initFromExistingFile-expanded"><a name="L548"></a><tt class="py-lineno"> 548</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-144" class="py-name" targets="Method Priithon.Mrc.Mrc2.seekHeader()=Priithon.Mrc.Mrc2-class.html#seekHeader"><a title="Priithon.Mrc.Mrc2.seekHeader" class="py-name" href="#" onclick="return doclink('link-144', 'seekHeader', 'link-144');">seekHeader</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L549"></a><tt class="py-lineno"> 549</tt>  <tt class="py-line">        <tt class="py-name">hdrArray</tt> <tt class="py-op">=</tt>  <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">rec</tt><tt class="py-op">.</tt><tt class="py-name">fromfile</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">,</tt> <tt id="link-145" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-145', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">=</tt><tt id="link-146" class="py-name" targets="Variable Priithon.Mrc.mrcHdr_dtype=Priithon.Mrc-module.html#mrcHdr_dtype"><a title="Priithon.Mrc.mrcHdr_dtype" class="py-name" href="#" onclick="return doclink('link-146', 'mrcHdr_dtype', 'link-146');">mrcHdr_dtype</a></tt><tt class="py-op">,</tt> <tt id="link-147" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-147', 'shape', 'link-20');">shape</a></tt><tt class="py-op">=</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L550"></a><tt class="py-lineno"> 550</tt>  <tt class="py-line"> </tt>
<a name="L551"></a><tt class="py-lineno"> 551</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt> <tt class="py-op">=</tt> <tt id="link-148" class="py-name" targets="Function Priithon.Mrc.implement_hdr()=Priithon.Mrc-module.html#implement_hdr"><a title="Priithon.Mrc.implement_hdr" class="py-name" href="#" onclick="return doclink('link-148', 'implement_hdr', 'link-148');">implement_hdr</a></tt><tt class="py-op">(</tt> <tt class="py-name">hdrArray</tt> <tt class="py-op">)</tt> </tt>
<a name="L552"></a><tt class="py-lineno"> 552</tt>  <tt class="py-line">   </tt>
<a name="L553"></a><tt class="py-lineno"> 553</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nzBeforeByteOrder</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L554"></a><tt class="py-lineno"> 554</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nzBeforeByteOrder</tt><tt class="py-op">&lt;</tt><tt class="py-number">0</tt> <tt class="py-keyword">or</tt> \ </tt>
<a name="L555"></a><tt class="py-lineno"> 555</tt>  <tt class="py-line">               <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nzBeforeByteOrder</tt><tt class="py-op">&gt;</tt><tt class="py-number">10000</tt><tt class="py-op">:</tt> </tt>
<a name="L556"></a><tt class="py-lineno"> 556</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">_array</tt><tt class="py-op">.</tt><tt id="link-149" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-149', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">_array</tt><tt class="py-op">.</tt><tt id="link-150" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-150', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">.</tt><tt class="py-name">newbyteorder</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L557"></a><tt class="py-lineno"> 557</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_fileIsByteSwapped</tt> <tt class="py-op">=</tt> <tt id="link-151" class="py-name"><a title="Priithon.wxPyPlot.True" class="py-name" href="#" onclick="return doclink('link-151', 'True', 'link-11');">True</a></tt> </tt>
<a name="L558"></a><tt class="py-lineno"> 558</tt>  <tt class="py-line"> </tt>
<a name="L559"></a><tt class="py-lineno"> 559</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrSize</tt>        <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt> </tt>
<a name="L560"></a><tt class="py-lineno"> 560</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumInts</tt>     <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumIntegers</tt> </tt>
<a name="L561"></a><tt class="py-lineno"> 561</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumFloats</tt>   <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumFloats</tt> </tt>
<a name="L562"></a><tt class="py-lineno"> 562</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrBytesPerSec</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumInts</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumFloats</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt> </tt>
<a name="L563"></a><tt class="py-lineno"> 563</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dataOffset</tt>   <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_hdrSize</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrSize</tt> </tt>
<a name="L564"></a><tt class="py-lineno"> 564</tt>  <tt class="py-line"> </tt>
<a name="L565"></a><tt class="py-lineno"> 565</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrSize</tt><tt class="py-op">&gt;</tt><tt class="py-number">0</tt> <tt class="py-keyword">and</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumInts</tt><tt class="py-op">&gt;</tt><tt class="py-number">0</tt> <tt class="py-keyword">or</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumFloats</tt><tt class="py-op">&gt;</tt><tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L566"></a><tt class="py-lineno"> 566</tt>  <tt class="py-line">            <tt class="py-name">nSecs</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrSize</tt> <tt class="py-op">/</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrBytesPerSec</tt> <tt class="py-op">)</tt> </tt>
<a name="L567"></a><tt class="py-lineno"> 567</tt>  <tt class="py-line">            <tt class="py-name">byteorder</tt> <tt class="py-op">=</tt> <tt class="py-string">'='</tt> <tt class="py-comment">## self._fileIsByteSwapped and '&gt;' or '&lt;'</tt> </tt>
<a name="L568"></a><tt class="py-lineno"> 568</tt>  <tt class="py-line">            <tt class="py-name">type_descr</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">(</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt>   <tt class="py-string">"%s%di4"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">byteorder</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumInts</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L569"></a><tt class="py-lineno"> 569</tt>  <tt class="py-line">                          <tt class="py-op">(</tt><tt class="py-string">"float"</tt><tt class="py-op">,</tt> <tt class="py-string">"%s%df4"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">byteorder</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumFloats</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
<a name="L570"></a><tt class="py-lineno"> 570</tt>  <tt class="py-line"> </tt>
<a name="L571"></a><tt class="py-lineno"> 571</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">rec</tt><tt class="py-op">.</tt><tt class="py-name">fromfile</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">,</tt> </tt>
<a name="L572"></a><tt class="py-lineno"> 572</tt>  <tt class="py-line">                                             <tt id="link-152" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-152', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">=</tt><tt class="py-name">type_descr</tt><tt class="py-op">,</tt> </tt>
<a name="L573"></a><tt class="py-lineno"> 573</tt>  <tt class="py-line">                                             <tt id="link-153" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-153', 'shape', 'link-20');">shape</a></tt><tt class="py-op">=</tt><tt class="py-name">nSecs</tt>  <tt class="py-op">)</tt> </tt>
<a name="L574"></a><tt class="py-lineno"> 574</tt>  <tt class="py-line"> </tt>
<a name="L575"></a><tt class="py-lineno"> 575</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_fileIsByteSwapped</tt><tt class="py-op">:</tt> </tt>
<a name="L576"></a><tt class="py-lineno"> 576</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">newbyteorder</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L577"></a><tt class="py-lineno"> 577</tt>  <tt class="py-line"> </tt>
<a name="L578"></a><tt class="py-lineno"> 578</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extInts</tt>   <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">field</tt><tt class="py-op">(</tt><tt class="py-string">'int'</tt><tt class="py-op">)</tt> </tt>
<a name="L579"></a><tt class="py-lineno"> 579</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extFloats</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">field</tt><tt class="py-op">(</tt><tt class="py-string">'float'</tt><tt class="py-op">)</tt> </tt>
<a name="L580"></a><tt class="py-lineno"> 580</tt>  <tt class="py-line"> </tt>
<a name="L581"></a><tt class="py-lineno"> 581</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-154" class="py-name"><a title="Priithon.Mrc.Mrc2._initWhenHdrArraySet" class="py-name" href="#" onclick="return doclink('link-154', '_initWhenHdrArraySet', 'link-143');">_initWhenHdrArraySet</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L582"></a><tt class="py-lineno"> 582</tt>  <tt class="py-line"> </tt>
<a name="Mrc2._initWhenHdrArraySet"></a><div id="Mrc2._initWhenHdrArraySet-def"><a name="L583"></a><tt class="py-lineno"> 583</tt> <a class="py-toggle" href="#" id="Mrc2._initWhenHdrArraySet-toggle" onclick="return toggle('Mrc2._initWhenHdrArraySet');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#_initWhenHdrArraySet">_initWhenHdrArraySet</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2._initWhenHdrArraySet-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2._initWhenHdrArraySet-expanded"><a name="L584"></a><tt class="py-lineno"> 584</tt>  <tt class="py-line">        <tt class="py-name">nx</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nsecs</tt> <tt class="py-op">=</tt>  <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt> </tt>
<a name="L585"></a><tt class="py-lineno"> 585</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nsecs</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt><tt class="py-name">nx</tt><tt class="py-op">)</tt> <tt class="py-comment"># todo: wavelenths , times</tt> </tt>
<a name="L586"></a><tt class="py-lineno"> 586</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape2d</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L587"></a><tt class="py-lineno"> 587</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dtype</tt>  <tt class="py-op">=</tt> <tt id="link-155" class="py-name"><a title="Priithon.Mrc.MrcMode2dtype" class="py-name" href="#" onclick="return doclink('link-155', 'MrcMode2dtype', 'link-24');">MrcMode2dtype</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">)</tt> </tt>
<a name="L588"></a><tt class="py-lineno"> 588</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_secByteSize</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt id="link-156" class="py-name" targets="Variable Priithon.mandel.nbytes=Priithon.mandel-module.html#nbytes,Variable Priithon.plt.interface.nbytes=Priithon.plt.interface-module.html#nbytes,Variable Priithon.plt.nbytes=Priithon.plt-module.html#nbytes,Variable Priithon.plt.plot_objects.nbytes=Priithon.plt.plot_objects-module.html#nbytes,Variable Priithon.plt.plot_utility.nbytes=Priithon.plt.plot_utility-module.html#nbytes,Variable Priithon.plt.wxplt.nbytes=Priithon.plt.wxplt-module.html#nbytes"><a title="Priithon.mandel.nbytes
Priithon.plt.interface.nbytes
Priithon.plt.nbytes
Priithon.plt.plot_objects.nbytes
Priithon.plt.plot_utility.nbytes
Priithon.plt.wxplt.nbytes" class="py-name" href="#" onclick="return doclink('link-156', 'nbytes', 'link-156');">nbytes</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dtype</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape2d</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L589"></a><tt class="py-lineno"> 589</tt>  <tt class="py-line">         </tt>
<a name="Mrc2.setHdrForShapeType"></a><div id="Mrc2.setHdrForShapeType-def"><a name="L590"></a><tt class="py-lineno"> 590</tt> <a class="py-toggle" href="#" id="Mrc2.setHdrForShapeType-toggle" onclick="return toggle('Mrc2.setHdrForShapeType');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#setHdrForShapeType">setHdrForShapeType</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">shape</tt><tt class="py-op">,</tt> <tt class="py-param">type</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.setHdrForShapeType-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.setHdrForShapeType-expanded"><a name="L591"></a><tt class="py-lineno"> 591</tt>  <tt class="py-line">        <tt class="py-name">mrcmode</tt> <tt class="py-op">=</tt> <tt id="link-157" class="py-name"><a title="Priithon.Mrc.dtype2MrcMode" class="py-name" href="#" onclick="return doclink('link-157', 'dtype2MrcMode', 'link-105');">dtype2MrcMode</a></tt><tt class="py-op">(</tt><tt class="py-name">type</tt><tt class="py-op">)</tt> </tt>
<a name="L592"></a><tt class="py-lineno"> 592</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">=</tt>  <tt class="py-name">mrcmode</tt> </tt>
<a name="L593"></a><tt class="py-lineno"> 593</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt> <tt class="py-op">=</tt> <tt id="link-158" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-158', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt><tt id="link-159" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-159', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">,</tt>  <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt><tt id="link-160" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-160', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L594"></a><tt class="py-lineno"> 594</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-161" class="py-name"><a title="Priithon.Mrc.Mrc2._initWhenHdrArraySet" class="py-name" href="#" onclick="return doclink('link-161', '_initWhenHdrArraySet', 'link-143');">_initWhenHdrArraySet</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L595"></a><tt class="py-lineno"> 595</tt>  <tt class="py-line">        <tt class="py-comment">#       self._shape = shape</tt> </tt>
<a name="L596"></a><tt class="py-lineno"> 596</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#       self._shape2d = self._shape[-2:]</tt> </tt>
<a name="L597"></a><tt class="py-lineno"> 597</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#       self._dtype  = type</tt> </tt>
<a name="L598"></a><tt class="py-lineno"> 598</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#       self._secByteSize = self._dtype.itemsize * N.prod( self._shape2d )</tt> </tt>
<a name="L599"></a><tt class="py-lineno"> 599</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#       #init_simple(self._hdrArray, mrcmode, shape)</tt> </tt>
<a name="L600"></a><tt class="py-lineno"> 600</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L601"></a><tt class="py-lineno"> 601</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.makeExtendedHdr"></a><div id="Mrc2.makeExtendedHdr-def"><a name="L602"></a><tt class="py-lineno"> 602</tt> <a class="py-toggle" href="#" id="Mrc2.makeExtendedHdr-toggle" onclick="return toggle('Mrc2.makeExtendedHdr');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#makeExtendedHdr">makeExtendedHdr</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">numInts</tt><tt class="py-op">,</tt> <tt class="py-param">numFloats</tt><tt class="py-op">,</tt> <tt class="py-param">nSecs</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.makeExtendedHdr-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.makeExtendedHdr-expanded"><a name="L603"></a><tt class="py-lineno"> 603</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumInts</tt>     <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumIntegers</tt> <tt class="py-op">=</tt> <tt class="py-name">numInts</tt> </tt>
<a name="L604"></a><tt class="py-lineno"> 604</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumFloats</tt>   <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumFloats</tt>   <tt class="py-op">=</tt> <tt class="py-name">numFloats</tt> </tt>
<a name="L605"></a><tt class="py-lineno"> 605</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrBytesPerSec</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumInts</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumFloats</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt> </tt>
<a name="L606"></a><tt class="py-lineno"> 606</tt>  <tt class="py-line"> </tt>
<a name="L607"></a><tt class="py-lineno"> 607</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">nSecs</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L608"></a><tt class="py-lineno"> 608</tt>  <tt class="py-line">            <tt class="py-name">nSecs</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L609"></a><tt class="py-lineno"> 609</tt>  <tt class="py-line"> </tt>
<a name="L610"></a><tt class="py-lineno"> 610</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrSize</tt>        <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt> <tt class="py-op">=</tt> <tt id="link-162" class="py-name" targets="Function Priithon.Mrc.minExtHdrSize()=Priithon.Mrc-module.html#minExtHdrSize"><a title="Priithon.Mrc.minExtHdrSize" class="py-name" href="#" onclick="return doclink('link-162', 'minExtHdrSize', 'link-162');">minExtHdrSize</a></tt><tt class="py-op">(</tt><tt class="py-name">nSecs</tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrBytesPerSec</tt><tt class="py-op">)</tt> </tt>
<a name="L611"></a><tt class="py-lineno"> 611</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dataOffset</tt>   <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_hdrSize</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrSize</tt> </tt>
<a name="L612"></a><tt class="py-lineno"> 612</tt>  <tt class="py-line"> </tt>
<a name="L613"></a><tt class="py-lineno"> 613</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrSize</tt><tt class="py-op">&gt;</tt><tt class="py-number">0</tt> <tt class="py-keyword">and</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumInts</tt><tt class="py-op">&gt;</tt><tt class="py-number">0</tt> <tt class="py-keyword">or</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumFloats</tt><tt class="py-op">&gt;</tt><tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L614"></a><tt class="py-lineno"> 614</tt>  <tt class="py-line">            <tt class="py-name">nSecs</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrSize</tt> <tt class="py-op">/</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrBytesPerSec</tt> <tt class="py-op">)</tt> </tt>
<a name="L615"></a><tt class="py-lineno"> 615</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">recarray</tt><tt class="py-op">(</tt><tt class="py-name">nSecs</tt><tt class="py-op">,</tt><tt class="py-comment">#None,#self._f,</tt> </tt>
<a name="L616"></a><tt class="py-lineno"> 616</tt>  <tt class="py-line">                                           <tt class="py-name">formats</tt><tt class="py-op">=</tt><tt class="py-string">"%di4,%df4"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumInts</tt><tt class="py-op">,</tt> </tt>
<a name="L617"></a><tt class="py-lineno"> 617</tt>  <tt class="py-line">                                                                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrNumFloats</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L618"></a><tt class="py-lineno"> 618</tt>  <tt class="py-line">                                           <tt class="py-name">names</tt><tt class="py-op">=</tt><tt class="py-string">'int,float'</tt><tt class="py-op">)</tt> </tt>
<a name="L619"></a><tt class="py-lineno"> 619</tt>  <tt class="py-line">                                           <tt class="py-comment"># shape=nSecs)#  ,</tt> </tt>
<a name="L620"></a><tt class="py-lineno"> 620</tt>  <tt class="py-line"><tt class="py-comment"></tt>                                           <tt class="py-comment">#byteorder=byteorder)</tt> </tt>
<a name="L621"></a><tt class="py-lineno"> 621</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L622"></a><tt class="py-lineno"> 622</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extInts</tt>   <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">field</tt><tt class="py-op">(</tt><tt class="py-string">'int'</tt><tt class="py-op">)</tt> </tt>
<a name="L623"></a><tt class="py-lineno"> 623</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extFloats</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">field</tt><tt class="py-op">(</tt><tt class="py-string">'float'</tt><tt class="py-op">)</tt> </tt>
</div><a name="L624"></a><tt class="py-lineno"> 624</tt>  <tt class="py-line"> </tt>
<a name="L625"></a><tt class="py-lineno"> 625</tt>  <tt class="py-line">     </tt>
<a name="Mrc2.info"></a><div id="Mrc2.info-def"><a name="L626"></a><tt class="py-lineno"> 626</tt> <a class="py-toggle" href="#" id="Mrc2.info-toggle" onclick="return toggle('Mrc2.info');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#info">info</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.info-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.info-expanded"><a name="L627"></a><tt class="py-lineno"> 627</tt>  <tt class="py-line">        <tt class="py-docstring">"""print useful information from header"""</tt> </tt>
<a name="L628"></a><tt class="py-lineno"> 628</tt>  <tt class="py-line"> </tt>
<a name="L629"></a><tt class="py-lineno"> 629</tt>  <tt class="py-line">        <tt id="link-163" class="py-name"><a title="Priithon.Mrc.hdrInfo" class="py-name" href="#" onclick="return doclink('link-163', 'hdrInfo', 'link-60');">hdrInfo</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">)</tt> </tt>
</div><a name="L630"></a><tt class="py-lineno"> 630</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.close"></a><div id="Mrc2.close-def"><a name="L631"></a><tt class="py-lineno"> 631</tt> <a class="py-toggle" href="#" id="Mrc2.close-toggle" onclick="return toggle('Mrc2.close');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#close">close</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.close-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.close-expanded"><a name="L632"></a><tt class="py-lineno"> 632</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">.</tt><tt id="link-164" class="py-name"><a title="Priithon.Mrc.Mrc.close
Priithon.Mrc.Mrc2.close
Priithon.Scientific_IO_TextFile.TextFile.close
Priithon.plt.dumbdbm_patched._Database.close
Priithon.plt.interface.close
Priithon.readerSPE.File.close" class="py-name" href="#" onclick="return doclink('link-164', 'close', 'link-69');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="Mrc2.flush"></a><div id="Mrc2.flush-def"><a name="L633"></a><tt class="py-lineno"> 633</tt> <a class="py-toggle" href="#" id="Mrc2.flush-toggle" onclick="return toggle('Mrc2.flush');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#flush">flush</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.flush-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.flush-expanded"><a name="L634"></a><tt class="py-lineno"> 634</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">.</tt><tt id="link-165" class="py-name" targets="Method Priithon.Mrc.Mrc2.flush()=Priithon.Mrc.Mrc2-class.html#flush,Method Priithon.Scientific_IO_TextFile.TextFile.flush()=Priithon.Scientific_IO_TextFile.TextFile-class.html#flush,Method Priithon.py.pseudo.PseudoFile.flush()=Priithon.py.pseudo.PseudoFile-class.html#flush"><a title="Priithon.Mrc.Mrc2.flush
Priithon.Scientific_IO_TextFile.TextFile.flush
Priithon.py.pseudo.PseudoFile.flush" class="py-name" href="#" onclick="return doclink('link-165', 'flush', 'link-165');">flush</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L635"></a><tt class="py-lineno"> 635</tt>  <tt class="py-line">         </tt>
<a name="Mrc2.seekSec"></a><div id="Mrc2.seekSec-def"><a name="L636"></a><tt class="py-lineno"> 636</tt> <a class="py-toggle" href="#" id="Mrc2.seekSec-toggle" onclick="return toggle('Mrc2.seekSec');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#seekSec">seekSec</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">i</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.seekSec-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.seekSec-expanded"><a name="L637"></a><tt class="py-lineno"> 637</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_secByteSize</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> <tt class="py-comment"># type is None or self._shape2d is None:</tt> </tt>
<a name="L638"></a><tt class="py-lineno"> 638</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"not inited yet - unknown shape, type"</tt> </tt>
<a name="L639"></a><tt class="py-lineno"> 639</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dataOffset</tt> <tt class="py-op">+</tt> <tt id="link-166" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-166', 'i', 'link-50');">i</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_secByteSize</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L640"></a><tt class="py-lineno"> 640</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.seekHeader"></a><div id="Mrc2.seekHeader-def"><a name="L641"></a><tt class="py-lineno"> 641</tt> <a class="py-toggle" href="#" id="Mrc2.seekHeader-toggle" onclick="return toggle('Mrc2.seekHeader');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#seekHeader">seekHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.seekHeader-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.seekHeader-expanded"><a name="L642"></a><tt class="py-lineno"> 642</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L643"></a><tt class="py-lineno"> 643</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.seekExtHeader"></a><div id="Mrc2.seekExtHeader-def"><a name="L644"></a><tt class="py-lineno"> 644</tt> <a class="py-toggle" href="#" id="Mrc2.seekExtHeader-toggle" onclick="return toggle('Mrc2.seekExtHeader');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#seekExtHeader">seekExtHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.seekExtHeader-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.seekExtHeader-expanded"><a name="L645"></a><tt class="py-lineno"> 645</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_hdrSize</tt><tt class="py-op">)</tt> </tt>
</div><a name="L646"></a><tt class="py-lineno"> 646</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.readSec"></a><div id="Mrc2.readSec-def"><a name="L647"></a><tt class="py-lineno"> 647</tt> <a class="py-toggle" href="#" id="Mrc2.readSec-toggle" onclick="return toggle('Mrc2.readSec');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#readSec">readSec</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">i</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.readSec-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.readSec-expanded"><a name="L648"></a><tt class="py-lineno"> 648</tt>  <tt class="py-line">        <tt class="py-docstring">""" if i is None read "next" section at current position</tt> </tt>
<a name="L649"></a><tt class="py-lineno"> 649</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L650"></a><tt class="py-lineno"> 650</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt id="link-167" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-167', 'i', 'link-50');">i</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L651"></a><tt class="py-lineno"> 651</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="Priithon.Mrc.Mrc2.seekSec" class="py-name" href="#" onclick="return doclink('link-168', 'seekSec', 'link-93');">seekSec</a></tt><tt class="py-op">(</tt><tt id="link-169" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-169', 'i', 'link-50');">i</a></tt><tt class="py-op">)</tt> </tt>
<a name="L652"></a><tt class="py-lineno"> 652</tt>  <tt class="py-line"> </tt>
<a name="L653"></a><tt class="py-lineno"> 653</tt>  <tt class="py-line">        <tt class="py-name">a</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">fromfile</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dtype</tt><tt class="py-op">,</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape2d</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L654"></a><tt class="py-lineno"> 654</tt>  <tt class="py-line">        <tt class="py-name">a</tt><tt class="py-op">.</tt><tt id="link-170" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-170', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape2d</tt> </tt>
<a name="L655"></a><tt class="py-lineno"> 655</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">a</tt> </tt>
</div><a name="L656"></a><tt class="py-lineno"> 656</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.writeSec"></a><div id="Mrc2.writeSec-def"><a name="L657"></a><tt class="py-lineno"> 657</tt> <a class="py-toggle" href="#" id="Mrc2.writeSec-toggle" onclick="return toggle('Mrc2.writeSec');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#writeSec">writeSec</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">a</tt><tt class="py-op">,</tt> <tt class="py-param">i</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.writeSec-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.writeSec-expanded"><a name="L658"></a><tt class="py-lineno"> 658</tt>  <tt class="py-line">        <tt class="py-docstring">""" if i is None write "next" section at current position</tt> </tt>
<a name="L659"></a><tt class="py-lineno"> 659</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L660"></a><tt class="py-lineno"> 660</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt id="link-171" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-171', 'i', 'link-50');">i</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L661"></a><tt class="py-lineno"> 661</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-172" class="py-name"><a title="Priithon.Mrc.Mrc2.seekSec" class="py-name" href="#" onclick="return doclink('link-172', 'seekSec', 'link-93');">seekSec</a></tt><tt class="py-op">(</tt><tt id="link-173" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-173', 'i', 'link-50');">i</a></tt><tt class="py-op">)</tt> </tt>
<a name="L662"></a><tt class="py-lineno"> 662</tt>  <tt class="py-line"> </tt>
<a name="L663"></a><tt class="py-lineno"> 663</tt>  <tt class="py-line">        <tt class="py-comment"># todo check type, shape</tt> </tt>
<a name="L664"></a><tt class="py-lineno"> 664</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L665"></a><tt class="py-lineno"> 665</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">a</tt><tt class="py-op">.</tt><tt class="py-name">tofile</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">)</tt> </tt>
</div><a name="L666"></a><tt class="py-lineno"> 666</tt>  <tt class="py-line"> </tt>
<a name="L667"></a><tt class="py-lineno"> 667</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.readStack"></a><div id="Mrc2.readStack-def"><a name="L668"></a><tt class="py-lineno"> 668</tt> <a class="py-toggle" href="#" id="Mrc2.readStack-toggle" onclick="return toggle('Mrc2.readStack');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#readStack">readStack</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nz</tt><tt class="py-op">,</tt> <tt class="py-param">i</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.readStack-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.readStack-expanded"><a name="L669"></a><tt class="py-lineno"> 669</tt>  <tt class="py-line">        <tt class="py-docstring">""" if i is None read "next" section at current position</tt> </tt>
<a name="L670"></a><tt class="py-lineno"> 670</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L671"></a><tt class="py-lineno"> 671</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt id="link-174" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-174', 'i', 'link-50');">i</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L672"></a><tt class="py-lineno"> 672</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-175" class="py-name"><a title="Priithon.Mrc.Mrc2.seekSec" class="py-name" href="#" onclick="return doclink('link-175', 'seekSec', 'link-93');">seekSec</a></tt><tt class="py-op">(</tt><tt id="link-176" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-176', 'i', 'link-50');">i</a></tt><tt class="py-op">)</tt> </tt>
<a name="L673"></a><tt class="py-lineno"> 673</tt>  <tt class="py-line"> </tt>
<a name="L674"></a><tt class="py-lineno"> 674</tt>  <tt class="py-line">        <tt class="py-name">a</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">fromfile</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dtype</tt><tt class="py-op">,</tt> <tt class="py-name">nz</tt><tt class="py-op">*</tt><tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape2d</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L675"></a><tt class="py-lineno"> 675</tt>  <tt class="py-line">        <tt class="py-name">a</tt><tt class="py-op">.</tt><tt id="link-177" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-177', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nz</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">+</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_shape2d</tt> </tt>
<a name="L676"></a><tt class="py-lineno"> 676</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">a</tt> </tt>
</div><a name="L677"></a><tt class="py-lineno"> 677</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.writeStack"></a><div id="Mrc2.writeStack-def"><a name="L678"></a><tt class="py-lineno"> 678</tt> <a class="py-toggle" href="#" id="Mrc2.writeStack-toggle" onclick="return toggle('Mrc2.writeStack');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#writeStack">writeStack</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">a</tt><tt class="py-op">,</tt> <tt class="py-param">i</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.writeStack-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.writeStack-expanded"><a name="L679"></a><tt class="py-lineno"> 679</tt>  <tt class="py-line">        <tt class="py-docstring">""" if i is None write "next" section at current position</tt> </tt>
<a name="L680"></a><tt class="py-lineno"> 680</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L681"></a><tt class="py-lineno"> 681</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt id="link-178" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-178', 'i', 'link-50');">i</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L682"></a><tt class="py-lineno"> 682</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-179" class="py-name"><a title="Priithon.Mrc.Mrc2.seekSec" class="py-name" href="#" onclick="return doclink('link-179', 'seekSec', 'link-93');">seekSec</a></tt><tt class="py-op">(</tt><tt id="link-180" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-180', 'i', 'link-50');">i</a></tt><tt class="py-op">)</tt> </tt>
<a name="L683"></a><tt class="py-lineno"> 683</tt>  <tt class="py-line"> </tt>
<a name="L684"></a><tt class="py-lineno"> 684</tt>  <tt class="py-line">        <tt class="py-comment"># todo check type, shape</tt> </tt>
<a name="L685"></a><tt class="py-lineno"> 685</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L686"></a><tt class="py-lineno"> 686</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">a</tt><tt class="py-op">.</tt><tt class="py-name">tofile</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt><tt class="py-op">)</tt> </tt>
</div><a name="L687"></a><tt class="py-lineno"> 687</tt>  <tt class="py-line"> </tt>
<a name="L688"></a><tt class="py-lineno"> 688</tt>  <tt class="py-line"> </tt>
<a name="Mrc2.writeHeader"></a><div id="Mrc2.writeHeader-def"><a name="L689"></a><tt class="py-lineno"> 689</tt> <a class="py-toggle" href="#" id="Mrc2.writeHeader-toggle" onclick="return toggle('Mrc2.writeHeader');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#writeHeader">writeHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">seekTo0</tt><tt class="py-op">=</tt><tt id="link-181" class="py-name"><a title="Priithon.wxPyPlot.False" class="py-name" href="#" onclick="return doclink('link-181', 'False', 'link-12');">False</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.writeHeader-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.writeHeader-expanded"><a name="L690"></a><tt class="py-lineno"> 690</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-182" class="py-name"><a title="Priithon.Mrc.Mrc2.seekHeader" class="py-name" href="#" onclick="return doclink('link-182', 'seekHeader', 'link-144');">seekHeader</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L691"></a><tt class="py-lineno"> 691</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">_array</tt><tt class="py-op">.</tt><tt class="py-name">tofile</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt> <tt class="py-op">)</tt> </tt>
<a name="L692"></a><tt class="py-lineno"> 692</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">seekTo0</tt><tt class="py-op">:</tt> </tt>
<a name="L693"></a><tt class="py-lineno"> 693</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-183" class="py-name"><a title="Priithon.Mrc.Mrc2.seekSec" class="py-name" href="#" onclick="return doclink('link-183', 'seekSec', 'link-93');">seekSec</a></tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L694"></a><tt class="py-lineno"> 694</tt>  <tt class="py-line">         </tt>
<a name="Mrc2.writeExtHeader"></a><div id="Mrc2.writeExtHeader-def"><a name="L695"></a><tt class="py-lineno"> 695</tt> <a class="py-toggle" href="#" id="Mrc2.writeExtHeader-toggle" onclick="return toggle('Mrc2.writeExtHeader');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc.Mrc2-class.html#writeExtHeader">writeExtHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">seekTo0</tt><tt class="py-op">=</tt><tt id="link-184" class="py-name"><a title="Priithon.wxPyPlot.False" class="py-name" href="#" onclick="return doclink('link-184', 'False', 'link-12');">False</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Mrc2.writeExtHeader-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="Mrc2.writeExtHeader-expanded"><a name="L696"></a><tt class="py-lineno"> 696</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-185" class="py-name" targets="Method Priithon.Mrc.Mrc2.seekExtHeader()=Priithon.Mrc.Mrc2-class.html#seekExtHeader"><a title="Priithon.Mrc.Mrc2.seekExtHeader" class="py-name" href="#" onclick="return doclink('link-185', 'seekExtHeader', 'link-185');">seekExtHeader</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L697"></a><tt class="py-lineno"> 697</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_extHdrArray</tt><tt class="py-op">.</tt><tt class="py-name">tofile</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_f</tt> <tt class="py-op">)</tt> </tt>
<a name="L698"></a><tt class="py-lineno"> 698</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">seekTo0</tt><tt class="py-op">:</tt> </tt>
<a name="L699"></a><tt class="py-lineno"> 699</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-186" class="py-name"><a title="Priithon.Mrc.Mrc2.seekSec" class="py-name" href="#" onclick="return doclink('link-186', 'seekSec', 'link-93');">seekSec</a></tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L700"></a><tt class="py-lineno"> 700</tt>  <tt class="py-line">         </tt>
<a name="L701"></a><tt class="py-lineno"> 701</tt>  <tt class="py-line"> </tt>
<a name="L702"></a><tt class="py-lineno"> 702</tt>  <tt class="py-line"><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L703"></a><tt class="py-lineno"> 703</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L704"></a><tt class="py-lineno"> 704</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L705"></a><tt class="py-lineno"> 705</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">###########################################################################</tt> </tt>
<a name="L706"></a><tt class="py-lineno"> 706</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L707"></a><tt class="py-lineno"> 707</tt>  <tt class="py-line"> </tt>
<a name="minExtHdrSize"></a><div id="minExtHdrSize-def"><a name="L708"></a><tt class="py-lineno"> 708</tt> <a class="py-toggle" href="#" id="minExtHdrSize-toggle" onclick="return toggle('minExtHdrSize');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#minExtHdrSize">minExtHdrSize</a><tt class="py-op">(</tt><tt class="py-param">nSecs</tt><tt class="py-op">,</tt> <tt class="py-param">bytesPerSec</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="minExtHdrSize-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="minExtHdrSize-expanded"><a name="L709"></a><tt class="py-lineno"> 709</tt>  <tt class="py-line">    <tt class="py-docstring">"""return smallest multiple of 1024 to fit extHdr data</tt> </tt>
<a name="L710"></a><tt class="py-lineno"> 710</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L711"></a><tt class="py-lineno"> 711</tt>  <tt class="py-line">    <tt class="py-keyword">import</tt> <tt class="py-name">math</tt> </tt>
<a name="L712"></a><tt class="py-lineno"> 712</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt> <tt class="py-name">math</tt><tt class="py-op">.</tt><tt id="link-187" class="py-name" targets="Variable Priithon.mandel.ceil=Priithon.mandel-module.html#ceil,Variable Priithon.plt.ceil=Priithon.plt-module.html#ceil,Variable Priithon.plt.interface.ceil=Priithon.plt.interface-module.html#ceil,Variable Priithon.plt.plot_objects.ceil=Priithon.plt.plot_objects-module.html#ceil,Variable Priithon.plt.plot_utility.ceil=Priithon.plt.plot_utility-module.html#ceil,Variable Priithon.plt.wxplt.ceil=Priithon.plt.wxplt-module.html#ceil"><a title="Priithon.mandel.ceil
Priithon.plt.ceil
Priithon.plt.interface.ceil
Priithon.plt.plot_objects.ceil
Priithon.plt.plot_utility.ceil
Priithon.plt.wxplt.ceil" class="py-name" href="#" onclick="return doclink('link-187', 'ceil', 'link-187');">ceil</a></tt><tt class="py-op">(</tt><tt class="py-name">nSecs</tt> <tt class="py-op">*</tt> <tt class="py-name">bytesPerSec</tt> <tt class="py-op">/</tt> <tt class="py-number">1024.</tt><tt class="py-op">)</tt><tt class="py-op">*</tt><tt class="py-number">1024</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L713"></a><tt class="py-lineno"> 713</tt>  <tt class="py-line"> </tt>
<a name="L714"></a><tt class="py-lineno"> 714</tt>  <tt class="py-line"> </tt>
<a name="MrcMode2dtype"></a><div id="MrcMode2dtype-def"><a name="L715"></a><tt class="py-lineno"> 715</tt> <a class="py-toggle" href="#" id="MrcMode2dtype-toggle" onclick="return toggle('MrcMode2dtype');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#MrcMode2dtype">MrcMode2dtype</a><tt class="py-op">(</tt><tt class="py-param">mode</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="MrcMode2dtype-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="MrcMode2dtype-expanded"><a name="L716"></a><tt class="py-lineno"> 716</tt>  <tt class="py-line">    <tt class="py-name">PixelTypes</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">,</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">,</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt>  <tt class="py-comment"># 0 1 2</tt> </tt>
<a name="L717"></a><tt class="py-lineno"> 717</tt>  <tt class="py-line">                  <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> <tt class="py-comment"># FIXME               # 3</tt> </tt>
<a name="L718"></a><tt class="py-lineno"> 718</tt>  <tt class="py-line">                  <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">complex64</tt><tt class="py-op">,</tt>                    <tt class="py-comment"># 4</tt> </tt>
<a name="L719"></a><tt class="py-lineno"> 719</tt>  <tt class="py-line">                  <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">,</tt>                        <tt class="py-comment"># 5 (IW_EMTOM)</tt> </tt>
<a name="L720"></a><tt class="py-lineno"> 720</tt>  <tt class="py-line">                  <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">,</tt>                       <tt class="py-comment"># 6</tt> </tt>
<a name="L721"></a><tt class="py-lineno"> 721</tt>  <tt class="py-line">                  <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt>                         <tt class="py-comment"># 7</tt> </tt>
<a name="L722"></a><tt class="py-lineno"> 722</tt>  <tt class="py-line">                  <tt class="py-op">)</tt> </tt>
<a name="L723"></a><tt class="py-lineno"> 723</tt>  <tt class="py-line"> </tt>
<a name="L724"></a><tt class="py-lineno"> 724</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">mode</tt><tt class="py-op">&lt;</tt><tt class="py-number">0</tt> <tt class="py-keyword">or</tt> <tt class="py-name">mode</tt><tt class="py-op">&gt;</tt><tt class="py-number">7</tt><tt class="py-op">:</tt> </tt>
<a name="L725"></a><tt class="py-lineno"> 725</tt>  <tt class="py-line">        <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"Priism file supports pixeltype 0 to 7 (%d given)"</tt> <tt class="py-op">%</tt> <tt class="py-name">mode</tt> </tt>
<a name="L726"></a><tt class="py-lineno"> 726</tt>  <tt class="py-line">     </tt>
<a name="L727"></a><tt class="py-lineno"> 727</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">PixelTypes</tt><tt class="py-op">[</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">mode</tt><tt class="py-op">)</tt> <tt class="py-op">]</tt> </tt>
</div><a name="L728"></a><tt class="py-lineno"> 728</tt>  <tt class="py-line"> </tt>
<a name="dtype2MrcMode"></a><div id="dtype2MrcMode-def"><a name="L729"></a><tt class="py-lineno"> 729</tt> <a class="py-toggle" href="#" id="dtype2MrcMode-toggle" onclick="return toggle('dtype2MrcMode');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#dtype2MrcMode">dtype2MrcMode</a><tt class="py-op">(</tt><tt class="py-param">dtype</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="dtype2MrcMode-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="dtype2MrcMode-expanded"><a name="L730"></a><tt class="py-lineno"> 730</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-188" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-188', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">==</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">:</tt> </tt>
<a name="L731"></a><tt class="py-lineno"> 731</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-number">0</tt> </tt>
<a name="L732"></a><tt class="py-lineno"> 732</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-189" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-189', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">==</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">:</tt> </tt>
<a name="L733"></a><tt class="py-lineno"> 733</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-number">1</tt> </tt>
<a name="L734"></a><tt class="py-lineno"> 734</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-190" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-190', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">==</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">:</tt> </tt>
<a name="L735"></a><tt class="py-lineno"> 735</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-number">2</tt> </tt>
<a name="L736"></a><tt class="py-lineno"> 736</tt>  <tt class="py-line"><tt class="py-comment">#      if type == N.int8:</tt> </tt>
<a name="L737"></a><tt class="py-lineno"> 737</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#          return 3</tt> </tt>
<a name="L738"></a><tt class="py-lineno"> 738</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-keyword">if</tt> <tt id="link-191" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-191', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">==</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">complex64</tt><tt class="py-op">:</tt> </tt>
<a name="L739"></a><tt class="py-lineno"> 739</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-number">4</tt> </tt>
<a name="L740"></a><tt class="py-lineno"> 740</tt>  <tt class="py-line"><tt class="py-comment">#      if type == N.In:</tt> </tt>
<a name="L741"></a><tt class="py-lineno"> 741</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#          return 5</tt> </tt>
<a name="L742"></a><tt class="py-lineno"> 742</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-keyword">if</tt> <tt id="link-192" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-192', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">==</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">:</tt> </tt>
<a name="L743"></a><tt class="py-lineno"> 743</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-number">6</tt> </tt>
<a name="L744"></a><tt class="py-lineno"> 744</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-193" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-193', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">==</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">:</tt> </tt>
<a name="L745"></a><tt class="py-lineno"> 745</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-number">7</tt> </tt>
<a name="L746"></a><tt class="py-lineno"> 746</tt>  <tt class="py-line">    <tt class="py-keyword">raise</tt> <tt class="py-name">TypeError</tt><tt class="py-op">,</tt> <tt class="py-string">"MRC does not support %s (%s)"</tt><tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-194" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-194', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">.</tt><tt id="link-195" class="py-name" targets="Variable Priithon.py.crust.Crust.name=Priithon.py.crust.Crust-class.html#name,Variable Priithon.py.crust.CrustFrame.name=Priithon.py.crust.CrustFrame-class.html#name,Variable Priithon.py.filling.Filling.name=Priithon.py.filling.Filling-class.html#name,Variable Priithon.py.filling.FillingFrame.name=Priithon.py.filling.FillingFrame-class.html#name,Variable Priithon.py.filling.FillingText.name=Priithon.py.filling.FillingText-class.html#name,Variable Priithon.py.filling.FillingTree.name=Priithon.py.filling.FillingTree-class.html#name,Variable Priithon.py.shell.Shell.name=Priithon.py.shell.Shell-class.html#name,Variable Priithon.py.shell.ShellFacade.name=Priithon.py.shell.ShellFacade-class.html#name,Variable Priithon.py.shell.ShellFrame.name=Priithon.py.shell.ShellFrame-class.html#name"><a title="Priithon.py.crust.Crust.name
Priithon.py.crust.CrustFrame.name
Priithon.py.filling.Filling.name
Priithon.py.filling.FillingFrame.name
Priithon.py.filling.FillingText.name
Priithon.py.filling.FillingTree.name
Priithon.py.shell.Shell.name
Priithon.py.shell.ShellFacade.name
Priithon.py.shell.ShellFrame.name" class="py-name" href="#" onclick="return doclink('link-195', 'name', 'link-195');">name</a></tt><tt class="py-op">,</tt> <tt id="link-196" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-196', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L747"></a><tt class="py-lineno"> 747</tt>  <tt class="py-line"> </tt>
<a name="L748"></a><tt class="py-lineno"> 748</tt>  <tt class="py-line"> </tt>
<a name="shapeFromHdr"></a><div id="shapeFromHdr-def"><a name="L749"></a><tt class="py-lineno"> 749</tt> <a class="py-toggle" href="#" id="shapeFromHdr-toggle" onclick="return toggle('shapeFromHdr');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#shapeFromHdr">shapeFromHdr</a><tt class="py-op">(</tt><tt class="py-param">hdr</tt><tt class="py-op">,</tt> <tt class="py-param">verbose</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="shapeFromHdr-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="shapeFromHdr-expanded"><a name="L750"></a><tt class="py-lineno"> 750</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L751"></a><tt class="py-lineno"> 751</tt>  <tt class="py-line"><tt class="py-docstring">    return "smart" shape  </tt> </tt>
<a name="L752"></a><tt class="py-lineno"> 752</tt>  <tt class="py-line"><tt class="py-docstring">    considering numTimes, numWavelenth and hdr.ImgSequence</tt> </tt>
<a name="L753"></a><tt class="py-lineno"> 753</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L754"></a><tt class="py-lineno"> 754</tt>  <tt class="py-line"><tt class="py-docstring">    if verbose:</tt> </tt>
<a name="L755"></a><tt class="py-lineno"> 755</tt>  <tt class="py-line"><tt class="py-docstring">        print somthing like: w,t,z,y,x  ot z,y,x</tt> </tt>
<a name="L756"></a><tt class="py-lineno"> 756</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L757"></a><tt class="py-lineno"> 757</tt>  <tt class="py-line">    <tt class="py-name">zOrder</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-comment"># , 'Image sequence. 0=ZTW, 1=WZT, 2=ZWT. '),</tt> </tt>
<a name="L758"></a><tt class="py-lineno"> 758</tt>  <tt class="py-line">    <tt class="py-name">nt</tt><tt class="py-op">,</tt><tt class="py-name">nw</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> </tt>
<a name="L759"></a><tt class="py-lineno"> 759</tt>  <tt class="py-line">    <tt class="py-name">nx</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nsecs</tt> <tt class="py-op">=</tt>  <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt> </tt>
<a name="L760"></a><tt class="py-lineno"> 760</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L761"></a><tt class="py-lineno"> 761</tt>  <tt class="py-line">        <tt class="py-comment">#20051213(ref."other's" MRC) print " ** NumTimes is zero - I assume 1."</tt> </tt>
<a name="L762"></a><tt class="py-lineno"> 762</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-name">nt</tt><tt class="py-op">=</tt><tt class="py-number">1</tt> </tt>
<a name="L763"></a><tt class="py-lineno"> 763</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L764"></a><tt class="py-lineno"> 764</tt>  <tt class="py-line">        <tt class="py-comment">#20051213(ref."other's" MRC) print " ** NumWaves is zero - I assume 1."</tt> </tt>
<a name="L765"></a><tt class="py-lineno"> 765</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-name">nw</tt><tt class="py-op">=</tt><tt class="py-number">1</tt> </tt>
<a name="L766"></a><tt class="py-lineno"> 766</tt>  <tt class="py-line">    <tt class="py-name">nz</tt> <tt class="py-op">=</tt> <tt class="py-name">nsecs</tt> <tt class="py-op">//</tt> <tt class="py-name">nt</tt> <tt class="py-op">//</tt> <tt class="py-name">nw</tt> </tt>
<a name="L767"></a><tt class="py-lineno"> 767</tt>  <tt class="py-line"> </tt>
<a name="L768"></a><tt class="py-lineno"> 768</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-name">nw</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L769"></a><tt class="py-lineno"> 769</tt>  <tt class="py-line">        <tt id="link-197" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-197', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nz</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nx</tt><tt class="py-op">)</tt> </tt>
<a name="L770"></a><tt class="py-lineno"> 770</tt>  <tt class="py-line">        <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"zyx"</tt> </tt>
<a name="L771"></a><tt class="py-lineno"> 771</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">nz</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt> <tt class="py-op">==</tt> <tt class="py-name">nw</tt><tt class="py-op">:</tt> </tt>
<a name="L772"></a><tt class="py-lineno"> 772</tt>  <tt class="py-line">        <tt id="link-198" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-198', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nt</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nx</tt><tt class="py-op">)</tt> </tt>
<a name="L773"></a><tt class="py-lineno"> 773</tt>  <tt class="py-line">        <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"tyx"</tt> </tt>
<a name="L774"></a><tt class="py-lineno"> 774</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt> <tt class="py-keyword">or</tt> <tt class="py-name">nw</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L775"></a><tt class="py-lineno"> 775</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">zOrder</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt> <tt class="py-keyword">or</tt> <tt class="py-name">zOrder</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
<a name="L776"></a><tt class="py-lineno"> 776</tt>  <tt class="py-line">            <tt class="py-name">nn</tt> <tt class="py-op">=</tt> <tt class="py-name">nt</tt> </tt>
<a name="L777"></a><tt class="py-lineno"> 777</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L778"></a><tt class="py-lineno"> 778</tt>  <tt class="py-line">                <tt class="py-name">nn</tt> <tt class="py-op">=</tt> <tt class="py-name">nw</tt> </tt>
<a name="L779"></a><tt class="py-lineno"> 779</tt>  <tt class="py-line">                <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"wyx"</tt> </tt>
<a name="L780"></a><tt class="py-lineno"> 780</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L781"></a><tt class="py-lineno"> 781</tt>  <tt class="py-line">                <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"tyx"</tt> </tt>
<a name="L782"></a><tt class="py-lineno"> 782</tt>  <tt class="py-line">            <tt id="link-199" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-199', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nn</tt><tt class="py-op">,</tt> <tt class="py-name">nz</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nx</tt><tt class="py-op">)</tt> </tt>
<a name="L783"></a><tt class="py-lineno"> 783</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-comment"># if zOrder == 1:</tt> </tt>
<a name="L784"></a><tt class="py-lineno"> 784</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L785"></a><tt class="py-lineno"> 785</tt>  <tt class="py-line">                <tt id="link-200" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-200', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nz</tt><tt class="py-op">,</tt> <tt class="py-name">nw</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nx</tt><tt class="py-op">)</tt> </tt>
<a name="L786"></a><tt class="py-lineno"> 786</tt>  <tt class="py-line">                <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"zwyx"</tt> </tt>
<a name="L787"></a><tt class="py-lineno"> 787</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L788"></a><tt class="py-lineno"> 788</tt>  <tt class="py-line">                <tt id="link-201" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-201', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nt</tt><tt class="py-op">,</tt> <tt class="py-name">nz</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nx</tt><tt class="py-op">)</tt> </tt>
<a name="L789"></a><tt class="py-lineno"> 789</tt>  <tt class="py-line">                <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"tzyx"</tt> </tt>
<a name="L790"></a><tt class="py-lineno"> 790</tt>  <tt class="py-line">         </tt>
<a name="L791"></a><tt class="py-lineno"> 791</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-comment"># both nt and nw &gt; 1</tt> </tt>
<a name="L792"></a><tt class="py-lineno"> 792</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">zOrder</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L793"></a><tt class="py-lineno"> 793</tt>  <tt class="py-line">            <tt id="link-202" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-202', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nw</tt><tt class="py-op">,</tt> <tt class="py-name">nt</tt><tt class="py-op">,</tt> <tt class="py-name">nz</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nx</tt><tt class="py-op">)</tt> </tt>
<a name="L794"></a><tt class="py-lineno"> 794</tt>  <tt class="py-line">            <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"wtzyx"</tt> </tt>
<a name="L795"></a><tt class="py-lineno"> 795</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">zOrder</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L796"></a><tt class="py-lineno"> 796</tt>  <tt class="py-line">            <tt id="link-203" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-203', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nt</tt><tt class="py-op">,</tt> <tt class="py-name">nz</tt><tt class="py-op">,</tt> <tt class="py-name">nw</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nx</tt><tt class="py-op">)</tt> </tt>
<a name="L797"></a><tt class="py-lineno"> 797</tt>  <tt class="py-line">            <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"tzwyx"</tt> </tt>
<a name="L798"></a><tt class="py-lineno"> 798</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-comment"># zOrder == 2:</tt> </tt>
<a name="L799"></a><tt class="py-lineno"> 799</tt>  <tt class="py-line">            <tt id="link-204" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-204', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nt</tt><tt class="py-op">,</tt> <tt class="py-name">nw</tt><tt class="py-op">,</tt> <tt class="py-name">nz</tt><tt class="py-op">,</tt> <tt class="py-name">ny</tt><tt class="py-op">,</tt> <tt class="py-name">nx</tt><tt class="py-op">)</tt> </tt>
<a name="L800"></a><tt class="py-lineno"> 800</tt>  <tt class="py-line">            <tt class="py-name">orderLetters</tt> <tt class="py-op">=</tt> <tt class="py-string">"twzyx"</tt> </tt>
<a name="L801"></a><tt class="py-lineno"> 801</tt>  <tt class="py-line"> </tt>
<a name="L802"></a><tt class="py-lineno"> 802</tt>  <tt class="py-line"> </tt>
<a name="L803"></a><tt class="py-lineno"> 803</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">verbose</tt><tt class="py-op">:</tt> </tt>
<a name="L804"></a><tt class="py-lineno"> 804</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">","</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">orderLetters</tt><tt class="py-op">)</tt> </tt>
<a name="L805"></a><tt class="py-lineno"> 805</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt id="link-205" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-205', 'shape', 'link-20');">shape</a></tt> </tt>
</div><a name="L806"></a><tt class="py-lineno"> 806</tt>  <tt class="py-line"> </tt>
<a name="L807"></a><tt class="py-lineno"> 807</tt>  <tt class="py-line"> </tt>
<a name="L808"></a><tt class="py-lineno"> 808</tt>  <tt class="py-line"> </tt>
<a name="L809"></a><tt class="py-lineno"> 809</tt>  <tt class="py-line"><tt class="py-comment"># my hack to allow thinks like a.Mrc.hdr.d = (1,2,3)</tt> </tt>
<a name="implement_hdr"></a><div id="implement_hdr-def"><a name="L810"></a><tt class="py-lineno"> 810</tt> <a class="py-toggle" href="#" id="implement_hdr-toggle" onclick="return toggle('implement_hdr');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#implement_hdr">implement_hdr</a><tt class="py-op">(</tt><tt class="py-param">hdrArray</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="implement_hdr-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="implement_hdr-expanded"><a name="L811"></a><tt class="py-lineno"> 811</tt>  <tt class="py-line">    <tt class="py-keyword">class</tt> <tt class="py-def-name">hdr</tt><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L812"></a><tt class="py-lineno"> 812</tt>  <tt class="py-line">        <tt class="py-name">__slots__</tt> <tt class="py-op">=</tt> <tt id="link-206" class="py-name" targets="Variable Priithon.Mrc.mrcHdrNames=Priithon.Mrc-module.html#mrcHdrNames"><a title="Priithon.Mrc.mrcHdrNames" class="py-name" href="#" onclick="return doclink('link-206', 'mrcHdrNames', 'link-206');">mrcHdrNames</a></tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-op">[</tt><tt class="py-string">'_array'</tt><tt class="py-op">]</tt> </tt>
<a name="L813"></a><tt class="py-lineno"> 813</tt>  <tt class="py-line">        <tt class="py-keyword">def</tt> <tt class="py-def-name">__init__</tt><tt class="py-op">(</tt><tt class="py-param">s</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L814"></a><tt class="py-lineno"> 814</tt>  <tt class="py-line">            <tt class="py-keyword">pass</tt>     </tt>
</div><a name="L815"></a><tt class="py-lineno"> 815</tt>  <tt class="py-line">        <tt class="py-keyword">def</tt> <tt class="py-def-name">__setattr__</tt><tt class="py-op">(</tt><tt class="py-param">s</tt><tt class="py-op">,</tt> <tt class="py-param">n</tt><tt class="py-op">,</tt> <tt class="py-param">v</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L816"></a><tt class="py-lineno"> 816</tt>  <tt class="py-line">            <tt class="py-comment">#20070131 hdrArray.field(n)[0] = v</tt> </tt>
<a name="L817"></a><tt class="py-lineno"> 817</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-name">hdrArray</tt><tt class="py-op">[</tt><tt class="py-name">n</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">v</tt> </tt>
</div><a name="L818"></a><tt class="py-lineno"> 818</tt>  <tt class="py-line">        <tt class="py-keyword">def</tt> <tt class="py-def-name">__getattr__</tt><tt class="py-op">(</tt><tt class="py-param">s</tt><tt class="py-op">,</tt> <tt class="py-param">n</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L819"></a><tt class="py-lineno"> 819</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">n</tt> <tt class="py-op">==</tt> <tt class="py-string">'_array'</tt><tt class="py-op">:</tt> </tt>
<a name="L820"></a><tt class="py-lineno"> 820</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">hdrArray</tt>   <tt class="py-comment"># 20060818</tt> </tt>
<a name="L821"></a><tt class="py-lineno"> 821</tt>  <tt class="py-line">            <tt class="py-comment">#20070131 return hdrArray.field(n)[0]</tt> </tt>
<a name="L822"></a><tt class="py-lineno"> 822</tt>  <tt class="py-line"><tt class="py-comment"></tt>            <tt class="py-keyword">return</tt> <tt class="py-name">hdrArray</tt><tt class="py-op">[</tt><tt class="py-name">n</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
</div></div><a name="L823"></a><tt class="py-lineno"> 823</tt>  <tt class="py-line"> </tt>
<a name="L824"></a><tt class="py-lineno"> 824</tt>  <tt class="py-line">        <tt class="py-comment">## deprecated !!</tt> </tt>
<a name="L825"></a><tt class="py-lineno"> 825</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#def __call__(s, n):</tt> </tt>
<a name="L826"></a><tt class="py-lineno"> 826</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#    return hdrArray.field(n)[0]</tt> </tt>
<a name="L827"></a><tt class="py-lineno"> 827</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L828"></a><tt class="py-lineno"> 828</tt>  <tt class="py-line"> </tt>
<a name="L829"></a><tt class="py-lineno"> 829</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">hdr</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L830"></a><tt class="py-lineno"> 830</tt>  <tt class="py-line"> </tt>
<a name="L831"></a><tt class="py-lineno"> 831</tt>  <tt class="py-line"> </tt>
<a name="L832"></a><tt class="py-lineno"> 832</tt>  <tt class="py-line"><tt class="py-comment"># class function</tt> </tt>
<a name="makeHdrArray"></a><div id="makeHdrArray-def"><a name="L833"></a><tt class="py-lineno"> 833</tt> <a class="py-toggle" href="#" id="makeHdrArray-toggle" onclick="return toggle('makeHdrArray');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#makeHdrArray">makeHdrArray</a><tt class="py-op">(</tt><tt class="py-param">buffer</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="makeHdrArray-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="makeHdrArray-expanded"><a name="L834"></a><tt class="py-lineno"> 834</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-207" class="py-name" targets="Module Priithon.py.buffer=Priithon.py.buffer-module.html"><a title="Priithon.py.buffer" class="py-name" href="#" onclick="return doclink('link-207', 'buffer', 'link-207');">buffer</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L835"></a><tt class="py-lineno"> 835</tt>  <tt class="py-line">        <tt class="py-comment">#20070131  h = buffer.view()</tt> </tt>
<a name="L836"></a><tt class="py-lineno"> 836</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#20060131  h.__class__ = N.recarray</tt> </tt>
<a name="L837"></a><tt class="py-lineno"> 837</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-name">h</tt><tt class="py-op">=</tt><tt id="link-208" class="py-name"><a title="Priithon.py.buffer" class="py-name" href="#" onclick="return doclink('link-208', 'buffer', 'link-207');">buffer</a></tt> </tt>
<a name="L838"></a><tt class="py-lineno"> 838</tt>  <tt class="py-line">        <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L839"></a><tt class="py-lineno"> 839</tt>  <tt class="py-line">            <tt class="py-name">h</tt><tt class="py-op">.</tt><tt id="link-209" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-209', 'dtype', 'link-9');">dtype</a></tt> <tt class="py-op">=</tt> <tt id="link-210" class="py-name"><a title="Priithon.Mrc.mrcHdr_dtype" class="py-name" href="#" onclick="return doclink('link-210', 'mrcHdr_dtype', 'link-146');">mrcHdr_dtype</a></tt> </tt>
<a name="L840"></a><tt class="py-lineno"> 840</tt>  <tt class="py-line">        <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L841"></a><tt class="py-lineno"> 841</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">h</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt id="link-211" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-211', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">(</tt><tt id="link-212" class="py-name"><a title="Priithon.Mrc.mrcHdr_dtype" class="py-name" href="#" onclick="return doclink('link-212', 'mrcHdr_dtype', 'link-146');">mrcHdr_dtype</a></tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">itemsize</tt><tt class="py-op">:</tt> <tt class="py-comment">#1024</tt> </tt>
<a name="L842"></a><tt class="py-lineno"> 842</tt>  <tt class="py-line">                <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"header buffer should be of size %d, but %d bytes given"</tt> <tt class="py-op">%</tt><tt class="py-op">(</tt> </tt>
<a name="L843"></a><tt class="py-lineno"> 843</tt>  <tt class="py-line">                    <tt class="py-name">N</tt><tt class="py-op">.</tt><tt id="link-213" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.dtype" class="py-name" href="#" onclick="return doclink('link-213', 'dtype', 'link-9');">dtype</a></tt><tt class="py-op">(</tt><tt id="link-214" class="py-name"><a title="Priithon.Mrc.mrcHdr_dtype" class="py-name" href="#" onclick="return doclink('link-214', 'mrcHdr_dtype', 'link-146');">mrcHdr_dtype</a></tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">itemsize</tt><tt class="py-op">,</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">h</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L844"></a><tt class="py-lineno"> 844</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L845"></a><tt class="py-lineno"> 845</tt>  <tt class="py-line">                <tt class="py-keyword">raise</tt> </tt>
<a name="L846"></a><tt class="py-lineno"> 846</tt>  <tt class="py-line">        <tt class="py-keyword">import</tt> <tt class="py-name">weakref</tt>         <tt class="py-comment">#20070131   CHECK if this works</tt> </tt>
<a name="L847"></a><tt class="py-lineno"> 847</tt>  <tt class="py-line">        <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">weakref</tt><tt class="py-op">.</tt><tt class="py-name">proxy</tt><tt class="py-op">(</tt> <tt class="py-name">h</tt> <tt class="py-op">)</tt> <tt class="py-comment">#20070131   CHECK if this works</tt> </tt>
<a name="L848"></a><tt class="py-lineno"> 848</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L849"></a><tt class="py-lineno"> 849</tt>  <tt class="py-line">        <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">recarray</tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt id="link-215" class="py-name"><a title="Priithon.Mrc.mrcHdr_dtype" class="py-name" href="#" onclick="return doclink('link-215', 'mrcHdr_dtype', 'link-146');">mrcHdr_dtype</a></tt><tt class="py-op">)</tt> </tt>
<a name="L850"></a><tt class="py-lineno"> 850</tt>  <tt class="py-line"> </tt>
<a name="L851"></a><tt class="py-lineno"> 851</tt>  <tt class="py-line">    <tt class="py-comment">#20060818 return h</tt> </tt>
<a name="L852"></a><tt class="py-lineno"> 852</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-keyword">return</tt> <tt id="link-216" class="py-name"><a title="Priithon.Mrc.implement_hdr" class="py-name" href="#" onclick="return doclink('link-216', 'implement_hdr', 'link-148');">implement_hdr</a></tt><tt class="py-op">(</tt><tt class="py-name">h</tt><tt class="py-op">)</tt> </tt>
</div><a name="L853"></a><tt class="py-lineno"> 853</tt>  <tt class="py-line"> </tt>
<a name="L854"></a><tt class="py-lineno"> 854</tt>  <tt class="py-line"><tt class="py-comment"># class function</tt> </tt>
<a name="hdrInfo"></a><div id="hdrInfo-def"><a name="L855"></a><tt class="py-lineno"> 855</tt> <a class="py-toggle" href="#" id="hdrInfo-toggle" onclick="return toggle('hdrInfo');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#hdrInfo">hdrInfo</a><tt class="py-op">(</tt><tt class="py-param">hdr</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="hdrInfo-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="hdrInfo-expanded"><a name="L856"></a><tt class="py-lineno"> 856</tt>  <tt class="py-line">    <tt id="link-217" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-217', 'shape', 'link-20');">shape</a></tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt>     </tt>
<a name="L857"></a><tt class="py-lineno"> 857</tt>  <tt class="py-line">    <tt class="py-name">nz</tt> <tt class="py-op">=</tt> <tt id="link-218" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-218', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L858"></a><tt class="py-lineno"> 858</tt>  <tt class="py-line">    <tt class="py-name">numInts</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumIntegers</tt> </tt>
<a name="L859"></a><tt class="py-lineno"> 859</tt>  <tt class="py-line">    <tt class="py-name">numFloats</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumFloats</tt> </tt>
<a name="L860"></a><tt class="py-lineno"> 860</tt>  <tt class="py-line"> </tt>
<a name="L861"></a><tt class="py-lineno"> 861</tt>  <tt class="py-line">     </tt>
<a name="L862"></a><tt class="py-lineno"> 862</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"width:                      "</tt><tt class="py-op">,</tt> <tt id="link-219" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-219', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> </tt>
<a name="L863"></a><tt class="py-lineno"> 863</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"height:                     "</tt><tt class="py-op">,</tt> <tt id="link-220" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-220', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L864"></a><tt class="py-lineno"> 864</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"# total slices:             "</tt><tt class="py-op">,</tt> <tt id="link-221" class="py-name"><a title="Priithon.mockNDarray.mockNDarray.shape" class="py-name" href="#" onclick="return doclink('link-221', 'shape', 'link-20');">shape</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L865"></a><tt class="py-lineno"> 865</tt>  <tt class="py-line"> </tt>
<a name="L866"></a><tt class="py-lineno"> 866</tt>  <tt class="py-line">    <tt class="py-name">nt</tt><tt class="py-op">,</tt><tt class="py-name">nw</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> </tt>
<a name="L867"></a><tt class="py-lineno"> 867</tt>  <tt class="py-line"> </tt>
<a name="L868"></a><tt class="py-lineno"> 868</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt>  <tt class="py-keyword">or</tt> <tt class="py-name">nw</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L869"></a><tt class="py-lineno"> 869</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">" ** ERROR ** : NumTimes or NumWaves is zero"</tt> </tt>
<a name="L870"></a><tt class="py-lineno"> 870</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"NumTimes:"</tt><tt class="py-op">,</tt> <tt class="py-name">nt</tt> </tt>
<a name="L871"></a><tt class="py-lineno"> 871</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"NumWaves:"</tt><tt class="py-op">,</tt> <tt class="py-name">nw</tt> </tt>
<a name="L872"></a><tt class="py-lineno"> 872</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L873"></a><tt class="py-lineno"> 873</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt>  <tt class="py-keyword">and</tt>  <tt class="py-name">nw</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L874"></a><tt class="py-lineno"> 874</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> </tt>
<a name="L875"></a><tt class="py-lineno"> 875</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">nw</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> <tt class="py-comment"># TODO: make comment about order</tt> </tt>
<a name="L876"></a><tt class="py-lineno"> 876</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"  (%d times for %d zsecs)"</tt><tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nt</tt><tt class="py-op">,</tt> <tt class="py-name">nz</tt><tt class="py-op">/</tt><tt class="py-name">nt</tt><tt class="py-op">)</tt> </tt>
<a name="L877"></a><tt class="py-lineno"> 877</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L878"></a><tt class="py-lineno"> 878</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"  (%d waves in %d zsecs)"</tt><tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nw</tt><tt class="py-op">,</tt> <tt class="py-name">nz</tt><tt class="py-op">/</tt><tt class="py-name">nw</tt><tt class="py-op">)</tt> </tt>
<a name="L879"></a><tt class="py-lineno"> 879</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L880"></a><tt class="py-lineno"> 880</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"  (%d times for %d waves in %d zsecs)"</tt><tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nt</tt><tt class="py-op">,</tt> </tt>
<a name="L881"></a><tt class="py-lineno"> 881</tt>  <tt class="py-line">                                                           <tt class="py-name">nw</tt><tt class="py-op">,</tt> </tt>
<a name="L882"></a><tt class="py-lineno"> 882</tt>  <tt class="py-line">                                                           <tt class="py-name">nz</tt><tt class="py-op">/</tt><tt class="py-name">nw</tt><tt class="py-op">/</tt><tt class="py-name">nt</tt><tt class="py-op">)</tt> </tt>
<a name="L883"></a><tt class="py-lineno"> 883</tt>  <tt class="py-line">             </tt>
<a name="L884"></a><tt class="py-lineno"> 884</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nt</tt> <tt class="py-op">!=</tt> <tt class="py-number">1</tt>  <tt class="py-keyword">or</tt>  <tt class="py-name">nw</tt> <tt class="py-op">!=</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L885"></a><tt class="py-lineno"> 885</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"# slice order:        %d (0,1,2 = (wtz, tzw or twz)"</tt><tt class="py-op">%</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> </tt>
<a name="L886"></a><tt class="py-lineno"> 886</tt>  <tt class="py-line"> </tt>
<a name="L887"></a><tt class="py-lineno"> 887</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"pixel width x    (um):      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">d</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L888"></a><tt class="py-lineno"> 888</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"pixel width y    (um):      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">d</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L889"></a><tt class="py-lineno"> 889</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"pixel height     (um):      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">d</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> </tt>
<a name="L890"></a><tt class="py-lineno"> 890</tt>  <tt class="py-line"> </tt>
<a name="L891"></a><tt class="py-lineno"> 891</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"# wavelengths:              "</tt><tt class="py-op">,</tt> <tt class="py-name">nw</tt> </tt>
<a name="L892"></a><tt class="py-lineno"> 892</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"   wavelength 1  (nm):      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">wave</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L893"></a><tt class="py-lineno"> 893</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"    intensity min/max/mean: "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mmm1</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mmm1</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mmm1</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> </tt>
<a name="L894"></a><tt class="py-lineno"> 894</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">&gt;</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L895"></a><tt class="py-lineno"> 895</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"   wavelength 2  (nm):      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">wave</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L896"></a><tt class="py-lineno"> 896</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"    intensity min/max:      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm2</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm2</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L897"></a><tt class="py-lineno"> 897</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">&gt;</tt><tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
<a name="L898"></a><tt class="py-lineno"> 898</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"   wavelength 3  (nm):      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">wave</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> </tt>
<a name="L899"></a><tt class="py-lineno"> 899</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"    intensity min/max:      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm3</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm3</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L900"></a><tt class="py-lineno"> 900</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">&gt;</tt><tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L901"></a><tt class="py-lineno"> 901</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"   wavelength 4  (nm):      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">wave</tt><tt class="py-op">[</tt><tt class="py-number">3</tt><tt class="py-op">]</tt> </tt>
<a name="L902"></a><tt class="py-lineno"> 902</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"    intensity min/max:      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm4</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm4</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L903"></a><tt class="py-lineno"> 903</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nw</tt> <tt class="py-op">&gt;</tt><tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
<a name="L904"></a><tt class="py-lineno"> 904</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"   wavelength 5  (nm):      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">wave</tt><tt class="py-op">[</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> </tt>
<a name="L905"></a><tt class="py-lineno"> 905</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"    intensity min/max:      "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm5</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm5</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L906"></a><tt class="py-lineno"> 906</tt>  <tt class="py-line">     </tt>
<a name="L907"></a><tt class="py-lineno"> 907</tt>  <tt class="py-line">    <tt class="py-comment">#/  ostr + "# times:              " + num_times + '\n';</tt> </tt>
<a name="L908"></a><tt class="py-lineno"> 908</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#/  ostr += "# slice order:        " + 0 or 1 or 2 (ZTW or WZT or ZWT) + '\n';</tt> </tt>
<a name="L909"></a><tt class="py-lineno"> 909</tt>  <tt class="py-line"><tt class="py-comment"></tt>     </tt>
<a name="L910"></a><tt class="py-lineno"> 910</tt>  <tt class="py-line">     </tt>
<a name="L911"></a><tt class="py-lineno"> 911</tt>  <tt class="py-line">    <tt class="py-comment">#/  ostr +="filetype:              " += filetype ... 0=normal, ..., 2=stereo ...</tt> </tt>
<a name="L912"></a><tt class="py-lineno"> 912</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#/    ostr += "n1, n2, v1, v2:          " +=  depend on filetype ....</tt> </tt>
<a name="L913"></a><tt class="py-lineno"> 913</tt>  <tt class="py-line"><tt class="py-comment"></tt>     </tt>
<a name="L914"></a><tt class="py-lineno"> 914</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"lens type:                  "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">LensNum</tt><tt class="py-op">,</tt> </tt>
<a name="L915"></a><tt class="py-lineno"> 915</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">LensNum</tt> <tt class="py-op">==</tt> <tt class="py-number">12</tt><tt class="py-op">:</tt> </tt>
<a name="L916"></a><tt class="py-lineno"> 916</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">" (60x)"</tt> </tt>
<a name="L917"></a><tt class="py-lineno"> 917</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">LensNum</tt> <tt class="py-op">==</tt> <tt class="py-number">13</tt><tt class="py-op">:</tt> </tt>
<a name="L918"></a><tt class="py-lineno"> 918</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">" (100x)"</tt> </tt>
<a name="L919"></a><tt class="py-lineno"> 919</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L920"></a><tt class="py-lineno"> 920</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"(??)"</tt> </tt>
<a name="L921"></a><tt class="py-lineno"> 921</tt>  <tt class="py-line"> </tt>
<a name="L922"></a><tt class="py-lineno"> 922</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"origin   (um) x/y/z:        "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">zxy0</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">zxy0</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">zxy0</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L923"></a><tt class="py-lineno"> 923</tt>  <tt class="py-line"> </tt>
<a name="L924"></a><tt class="py-lineno"> 924</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-string">"# pixel data type:            "</tt><tt class="py-op">,</tt> </tt>
<a name="L925"></a><tt class="py-lineno"> 925</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L926"></a><tt class="py-lineno"> 926</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"8 bit (unsigned)"</tt> </tt>
<a name="L927"></a><tt class="py-lineno"> 927</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L928"></a><tt class="py-lineno"> 928</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"16 bit (signed)"</tt> </tt>
<a name="L929"></a><tt class="py-lineno"> 929</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
<a name="L930"></a><tt class="py-lineno"> 930</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"32 bit (signed real)"</tt> </tt>
<a name="L931"></a><tt class="py-lineno"> 931</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L932"></a><tt class="py-lineno"> 932</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"16 bit (signed complex integer)"</tt> </tt>
<a name="L933"></a><tt class="py-lineno"> 933</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
<a name="L934"></a><tt class="py-lineno"> 934</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"32 bit (signed complex real)"</tt> </tt>
<a name="L935"></a><tt class="py-lineno"> 935</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">==</tt> <tt class="py-number">5</tt><tt class="py-op">:</tt> </tt>
<a name="L936"></a><tt class="py-lineno"> 936</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"16 bit (signed) IW_EMTOM"</tt> </tt>
<a name="L937"></a><tt class="py-lineno"> 937</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">==</tt> <tt class="py-number">6</tt><tt class="py-op">:</tt> </tt>
<a name="L938"></a><tt class="py-lineno"> 938</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"16 bit (unsigned short)"</tt> </tt>
<a name="L939"></a><tt class="py-lineno"> 939</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">==</tt> <tt class="py-number">7</tt><tt class="py-op">:</tt> </tt>
<a name="L940"></a><tt class="py-lineno"> 940</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"32 bit (signed long)"</tt> </tt>
<a name="L941"></a><tt class="py-lineno"> 941</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt>                         <tt class="py-op">:</tt> </tt>
<a name="L942"></a><tt class="py-lineno"> 942</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">" ** undefined ** "</tt> </tt>
<a name="L943"></a><tt class="py-lineno"> 943</tt>  <tt class="py-line"> </tt>
<a name="L944"></a><tt class="py-lineno"> 944</tt>  <tt class="py-line">    <tt class="py-comment">#//ostr += "bytes before image data:     " + 1024+inbsym + '\n';</tt> </tt>
<a name="L945"></a><tt class="py-lineno"> 945</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-keyword">print</tt> <tt class="py-string">"# extended header size:       "</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt><tt class="py-op">,</tt> </tt>
<a name="L946"></a><tt class="py-lineno"> 946</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt> <tt class="py-op">&gt;</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L947"></a><tt class="py-lineno"> 947</tt>  <tt class="py-line">        <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">numInts</tt> <tt class="py-op">+</tt> <tt class="py-name">numFloats</tt> </tt>
<a name="L948"></a><tt class="py-lineno"> 948</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">n</tt><tt class="py-op">&gt;</tt><tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L949"></a><tt class="py-lineno"> 949</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">" (%d secs)"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt><tt class="py-op">/</tt><tt class="py-op">(</tt><tt class="py-number">4.</tt> <tt class="py-op">*</tt> <tt class="py-name">n</tt><tt class="py-op">)</tt> <tt class="py-op">,</tt><tt class="py-op">)</tt> </tt>
<a name="L950"></a><tt class="py-lineno"> 950</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L951"></a><tt class="py-lineno"> 951</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">" (??? secs)"</tt> </tt>
<a name="L952"></a><tt class="py-lineno"> 952</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">"  (%d ints + %d reals per section)"</tt><tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">numInts</tt><tt class="py-op">,</tt> <tt class="py-name">numFloats</tt><tt class="py-op">)</tt> </tt>
<a name="L953"></a><tt class="py-lineno"> 953</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L954"></a><tt class="py-lineno"> 954</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> </tt>
<a name="L955"></a><tt class="py-lineno"> 955</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt> <tt class="py-op">&lt;</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L956"></a><tt class="py-lineno"> 956</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-string">" ** ERROR ** : NumTitles less than zero (NumTitles ="</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt><tt class="py-op">,</tt> <tt class="py-string">")"</tt> </tt>
<a name="L957"></a><tt class="py-lineno"> 957</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt> <tt class="py-op">&gt;</tt><tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L958"></a><tt class="py-lineno"> 958</tt>  <tt class="py-line">        <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt> </tt>
<a name="L959"></a><tt class="py-lineno"> 959</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">n</tt><tt class="py-op">&gt;</tt><tt class="py-number">10</tt><tt class="py-op">:</tt> </tt>
<a name="L960"></a><tt class="py-lineno"> 960</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">" ** ERROR ** : NumTitles larger than 10 (NumTitles ="</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt><tt class="py-op">,</tt><tt class="py-string">")"</tt> </tt>
<a name="L961"></a><tt class="py-lineno"> 961</tt>  <tt class="py-line">            <tt class="py-name">n</tt><tt class="py-op">=</tt><tt class="py-number">10</tt> </tt>
<a name="L962"></a><tt class="py-lineno"> 962</tt>  <tt class="py-line">        <tt class="py-keyword">for</tt> <tt id="link-222" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-222', 'i', 'link-50');">i</a></tt> <tt class="py-keyword">in</tt> <tt id="link-223" class="py-name"><a title="Priithon.plt.plot_objects.axis_object.range" class="py-name" href="#" onclick="return doclink('link-223', 'range', 'link-104');">range</a></tt><tt class="py-op">(</tt> <tt class="py-name">n</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L963"></a><tt class="py-lineno"> 963</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"title %d: %s"</tt><tt class="py-op">%</tt><tt class="py-op">(</tt><tt id="link-224" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-224', 'i', 'link-50');">i</a></tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt id="link-225" class="py-name" targets="Function Priithon.plt.interface.title()=Priithon.plt.interface-module.html#title,Method Priithon.plt.wxplt.plot_frame.title()=Priithon.plt.wxplt.plot_frame-class.html#title"><a title="Priithon.plt.interface.title
Priithon.plt.wxplt.plot_frame.title" class="py-name" href="#" onclick="return doclink('link-225', 'title', 'link-225');">title</a></tt><tt class="py-op">[</tt><tt id="link-226" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-226', 'i', 'link-50');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
</div><a name="L964"></a><tt class="py-lineno"> 964</tt>  <tt class="py-line"> </tt>
<a name="L965"></a><tt class="py-lineno"> 965</tt>  <tt class="py-line">     </tt>
<a name="axisOrderStr"></a><div id="axisOrderStr-def"><a name="L966"></a><tt class="py-lineno"> 966</tt> <a class="py-toggle" href="#" id="axisOrderStr-toggle" onclick="return toggle('axisOrderStr');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#axisOrderStr">axisOrderStr</a><tt class="py-op">(</tt><tt class="py-param">hdr</tt><tt class="py-op">,</tt> <tt class="py-param">onlyLetters</tt><tt class="py-op">=</tt><tt id="link-227" class="py-name"><a title="Priithon.wxPyPlot.True" class="py-name" href="#" onclick="return doclink('link-227', 'True', 'link-11');">True</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="axisOrderStr-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="axisOrderStr-expanded"><a name="L967"></a><tt class="py-lineno"> 967</tt>  <tt class="py-line">    <tt class="py-docstring">"""return string indicating meaning of shape dimensions</tt> </tt>
<a name="L968"></a><tt class="py-lineno"> 968</tt>  <tt class="py-line"><tt class="py-docstring">    ## </tt> </tt>
<a name="L969"></a><tt class="py-lineno"> 969</tt>  <tt class="py-line"><tt class="py-docstring">    ## wtz   &lt;- non-interleaved</tt> </tt>
<a name="L970"></a><tt class="py-lineno"> 970</tt>  <tt class="py-line"><tt class="py-docstring">    ## tzw   &lt;- OM1 ( easy on stage)</tt> </tt>
<a name="L971"></a><tt class="py-lineno"> 971</tt>  <tt class="py-line"><tt class="py-docstring">    ## twz   &lt;- added by API (used at all ??)</tt> </tt>
<a name="L972"></a><tt class="py-lineno"> 972</tt>  <tt class="py-line"><tt class="py-docstring">    ## ^</tt> </tt>
<a name="L973"></a><tt class="py-lineno"> 973</tt>  <tt class="py-line"><tt class="py-docstring">    ## |</tt> </tt>
<a name="L974"></a><tt class="py-lineno"> 974</tt>  <tt class="py-line"><tt class="py-docstring">    ## +--- first letter 'fastest'</tt> </tt>
<a name="L975"></a><tt class="py-lineno"> 975</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L976"></a><tt class="py-lineno"> 976</tt>  <tt class="py-line"><tt class="py-docstring">    fixme: possibly wrong when doDataMap found bad file-size</tt> </tt>
<a name="L977"></a><tt class="py-lineno"> 977</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L978"></a><tt class="py-lineno"> 978</tt>  <tt class="py-line">    <tt class="py-name">zOrder</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt><tt class="py-op">)</tt> <tt class="py-comment"># , 'Image sequence. 0=ZTW, 1=WZT, 2=ZWT. '),</tt> </tt>
<a name="L979"></a><tt class="py-lineno"> 979</tt>  <tt class="py-line">    <tt class="py-name">nt</tt><tt class="py-op">,</tt><tt class="py-name">nw</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt><tt class="py-op">,</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> </tt>
<a name="L980"></a><tt class="py-lineno"> 980</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-name">nw</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L981"></a><tt class="py-lineno"> 981</tt>  <tt class="py-line">        <tt class="py-name">orderLetters</tt><tt class="py-op">=</tt> <tt class="py-string">"zyx"</tt> </tt>
<a name="L982"></a><tt class="py-lineno"> 982</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">nt</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L983"></a><tt class="py-lineno"> 983</tt>  <tt class="py-line">        <tt class="py-name">orderLetters</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-string">"wzyx"</tt><tt class="py-op">,</tt> <tt class="py-string">"zwyx"</tt><tt class="py-op">,</tt> <tt class="py-string">"wzyx"</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-name">zOrder</tt><tt class="py-op">]</tt> </tt>
<a name="L984"></a><tt class="py-lineno"> 984</tt>  <tt class="py-line">    <tt class="py-keyword">elif</tt> <tt class="py-name">nw</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L985"></a><tt class="py-lineno"> 985</tt>  <tt class="py-line">        <tt class="py-name">orderLetters</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-string">"tzyx"</tt><tt class="py-op">,</tt> <tt class="py-string">"tzyx"</tt><tt class="py-op">,</tt> <tt class="py-string">"tzyx"</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-name">zOrder</tt><tt class="py-op">]</tt> </tt>
<a name="L986"></a><tt class="py-lineno"> 986</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L987"></a><tt class="py-lineno"> 987</tt>  <tt class="py-line">        <tt class="py-name">orderLetters</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-string">"wtzyx"</tt><tt class="py-op">,</tt> <tt class="py-string">"tzwyx"</tt><tt class="py-op">,</tt> <tt class="py-string">"twzyx"</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-name">zOrder</tt><tt class="py-op">]</tt> </tt>
<a name="L988"></a><tt class="py-lineno"> 988</tt>  <tt class="py-line"> </tt>
<a name="L989"></a><tt class="py-lineno"> 989</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">onlyLetters</tt><tt class="py-op">:</tt> </tt>
<a name="L990"></a><tt class="py-lineno"> 990</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">orderLetters</tt> </tt>
<a name="L991"></a><tt class="py-lineno"> 991</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L992"></a><tt class="py-lineno"> 992</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-string">"["</tt><tt class="py-op">+</tt><tt class="py-string">","</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">orderLetters</tt><tt class="py-op">)</tt><tt class="py-op">+</tt><tt class="py-string">"]"</tt> </tt>
</div><a name="L993"></a><tt class="py-lineno"> 993</tt>  <tt class="py-line"> </tt>
<a name="L994"></a><tt class="py-lineno"> 994</tt>  <tt class="py-line"> </tt>
<a name="L995"></a><tt class="py-lineno"> 995</tt>  <tt class="py-line"> </tt>
<a name="L996"></a><tt class="py-lineno"> 996</tt>  <tt class="py-line"> </tt>
<a name="init_simple"></a><div id="init_simple-def"><a name="L997"></a><tt class="py-lineno"> 997</tt> <a class="py-toggle" href="#" id="init_simple-toggle" onclick="return toggle('init_simple');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#init_simple">init_simple</a><tt class="py-op">(</tt><tt class="py-param">hdr</tt><tt class="py-op">,</tt> <tt class="py-param">mode</tt><tt class="py-op">,</tt> <tt class="py-param">nxOrShape</tt><tt class="py-op">,</tt> <tt class="py-param">ny</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-param">nz</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="init_simple-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="init_simple-expanded"><a name="L998"></a><tt class="py-lineno"> 998</tt>  <tt class="py-line">    <tt class="py-docstring">"""note: if  nxOrShape is tuple it is nz,ny,nx (note the order!!)</tt> </tt>
<a name="L999"></a><tt class="py-lineno"> 999</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L1000"></a><tt class="py-lineno">1000</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">ny</tt> <tt class="py-keyword">is</tt> <tt class="py-name">nz</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L1001"></a><tt class="py-lineno">1001</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">nxOrShape</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
<a name="L1002"></a><tt class="py-lineno">1002</tt>  <tt class="py-line">            <tt class="py-name">nz</tt><tt class="py-op">,</tt><tt class="py-op">(</tt><tt class="py-name">ny</tt><tt class="py-op">,</tt><tt class="py-name">nx</tt><tt class="py-op">)</tt>  <tt class="py-op">=</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nxOrShape</tt> </tt>
<a name="L1003"></a><tt class="py-lineno">1003</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">nxOrShape</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L1004"></a><tt class="py-lineno">1004</tt>  <tt class="py-line">            <tt class="py-name">nz</tt><tt class="py-op">,</tt><tt class="py-name">ny</tt><tt class="py-op">,</tt><tt class="py-name">nx</tt>  <tt class="py-op">=</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nxOrShape</tt> </tt>
<a name="L1005"></a><tt class="py-lineno">1005</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">nxOrShape</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L1006"></a><tt class="py-lineno">1006</tt>  <tt class="py-line">            <tt class="py-name">nz</tt><tt class="py-op">,</tt><tt class="py-name">ny</tt><tt class="py-op">,</tt><tt class="py-name">nx</tt>  <tt class="py-op">=</tt> <tt class="py-name">nxOrShape</tt> </tt>
<a name="L1007"></a><tt class="py-lineno">1007</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L1008"></a><tt class="py-lineno">1008</tt>  <tt class="py-line">            <tt class="py-name">ny</tt><tt class="py-op">,</tt><tt class="py-name">nx</tt>  <tt class="py-op">=</tt> <tt class="py-name">nxOrShape</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L1009"></a><tt class="py-lineno">1009</tt>  <tt class="py-line">            <tt class="py-name">nz</tt>     <tt class="py-op">=</tt> <tt class="py-name">N</tt><tt class="py-op">.</tt><tt class="py-name">prod</tt><tt class="py-op">(</tt><tt class="py-name">nxOrShape</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L1010"></a><tt class="py-lineno">1010</tt>  <tt class="py-line">             </tt>
<a name="L1011"></a><tt class="py-lineno">1011</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L1012"></a><tt class="py-lineno">1012</tt>  <tt class="py-line">        <tt class="py-name">nx</tt> <tt class="py-op">=</tt> <tt class="py-name">nxOrShape</tt> </tt>
<a name="L1013"></a><tt class="py-lineno">1013</tt>  <tt class="py-line"> </tt>
<a name="L1014"></a><tt class="py-lineno">1014</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">Num</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">nx</tt><tt class="py-op">,</tt><tt class="py-name">ny</tt><tt class="py-op">,</tt><tt class="py-name">nz</tt><tt class="py-op">)</tt> </tt>
<a name="L1015"></a><tt class="py-lineno">1015</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">PixelType</tt> <tt class="py-op">=</tt> <tt class="py-name">mode</tt> </tt>
<a name="L1016"></a><tt class="py-lineno">1016</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mst</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> <tt class="py-comment"># 20060614: bugfixed was: (1,1,1))</tt> </tt>
<a name="L1017"></a><tt class="py-lineno">1017</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">m</tt>   <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">)</tt>  <tt class="py-comment"># CHECK : should be nx,ny,nz ??</tt> </tt>
<a name="L1018"></a><tt class="py-lineno">1018</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">d</tt>   <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L1019"></a><tt class="py-lineno">1019</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">angle</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">90</tt><tt class="py-op">,</tt><tt class="py-number">90</tt><tt class="py-op">,</tt><tt class="py-number">90</tt><tt class="py-op">)</tt> <tt class="py-comment"># 20060202: changed alpha,beta,gamma to 90 (was:0)</tt> </tt>
<a name="L1020"></a><tt class="py-lineno">1020</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt id="link-228" class="py-name" targets="Function Priithon.plt.interface.axis()=Priithon.plt.interface-module.html#axis,Method Priithon.plt.wxplt.plot_canvas.axis()=Priithon.plt.wxplt.plot_canvas-class.html#axis"><a title="Priithon.plt.interface.axis
Priithon.plt.wxplt.plot_canvas.axis" class="py-name" href="#" onclick="return doclink('link-228', 'axis', 'link-228');">axis</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-number">3</tt><tt class="py-op">)</tt> </tt>
<a name="L1021"></a><tt class="py-lineno">1021</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mmm1</tt><tt class="py-op">=</tt>  <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">100000</tt><tt class="py-op">,</tt><tt class="py-number">5000</tt><tt class="py-op">)</tt> </tt>
<a name="L1022"></a><tt class="py-lineno">1022</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">type</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1023"></a><tt class="py-lineno">1023</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">nspg</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1024"></a><tt class="py-lineno">1024</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">next</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1025"></a><tt class="py-lineno">1025</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">dvid</tt><tt class="py-op">=</tt> <tt class="py-number">0xc0a0</tt>  <tt class="py-comment"># CHECK - should "priithon" get it own ID !?</tt> </tt>
<a name="L1026"></a><tt class="py-lineno">1026</tt>  <tt class="py-line">    <tt class="py-comment">#20090402 hdr.blank= 0 #CHECK Hans: add ntst to record time domain offset</tt> </tt>
<a name="L1027"></a><tt class="py-lineno">1027</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">nblank</tt><tt class="py-op">=</tt><tt class="py-number">0</tt>   <tt class="py-comment">#20090402</tt> </tt>
<a name="L1028"></a><tt class="py-lineno">1028</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ntst</tt><tt class="py-op">=</tt><tt class="py-number">0</tt>     <tt class="py-comment">#20090402</tt> </tt>
<a name="L1029"></a><tt class="py-lineno">1029</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">extra</tt><tt class="py-op">=</tt><tt class="py-number">0</tt>    <tt class="py-comment">#20090402</tt> </tt>
<a name="L1030"></a><tt class="py-lineno">1030</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumIntegers</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1031"></a><tt class="py-lineno">1031</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumFloats</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1032"></a><tt class="py-lineno">1032</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">sub</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1033"></a><tt class="py-lineno">1033</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">zfac</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1034"></a><tt class="py-lineno">1034</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm2</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">10000</tt><tt class="py-op">)</tt> </tt>
<a name="L1035"></a><tt class="py-lineno">1035</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm3</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">10000</tt><tt class="py-op">)</tt> </tt>
<a name="L1036"></a><tt class="py-lineno">1036</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm4</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">10000</tt><tt class="py-op">)</tt> </tt>
<a name="L1037"></a><tt class="py-lineno">1037</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImageType</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1038"></a><tt class="py-lineno">1038</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">LensNum</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1039"></a><tt class="py-lineno">1039</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">n1</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1040"></a><tt class="py-lineno">1040</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">n2</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1041"></a><tt class="py-lineno">1041</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">v1</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1042"></a><tt class="py-lineno">1042</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">v2</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1043"></a><tt class="py-lineno">1043</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">mm5</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">10000</tt><tt class="py-op">)</tt> </tt>
<a name="L1044"></a><tt class="py-lineno">1044</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt><tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L1045"></a><tt class="py-lineno">1045</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> <tt class="py-comment"># Zero =&gt; not interleaved. That means z changes</tt> </tt>
<a name="L1046"></a><tt class="py-lineno">1046</tt>  <tt class="py-line">    <tt class="py-comment">#//                           // fastest, then time, then waves;</tt> </tt>
<a name="L1047"></a><tt class="py-lineno">1047</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#//                           // 1 =&gt; interleaved. That means wave changes fastest,</tt> </tt>
<a name="L1048"></a><tt class="py-lineno">1048</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-comment">#//                           // then z, then time.</tt> </tt>
<a name="L1049"></a><tt class="py-lineno">1049</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">tilt</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
<a name="L1050"></a><tt class="py-lineno">1050</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt><tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L1051"></a><tt class="py-lineno">1051</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">wave</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
<a name="L1052"></a><tt class="py-lineno">1052</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">zxy0</tt><tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
<a name="L1053"></a><tt class="py-lineno">1053</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt><tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L1054"></a><tt class="py-lineno">1054</tt>  <tt class="py-line">    <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt id="link-229" class="py-name"><a title="Priithon.plt.interface.title
Priithon.plt.wxplt.plot_frame.title" class="py-name" href="#" onclick="return doclink('link-229', 'title', 'link-225');">title</a></tt><tt class="py-op">=</tt> <tt class="py-string">'\0'</tt> <tt class="py-op">*</tt> <tt class="py-number">80</tt> </tt>
</div><a name="L1055"></a><tt class="py-lineno">1055</tt>  <tt class="py-line"> </tt>
<a name="L1056"></a><tt class="py-lineno">1056</tt>  <tt class="py-line"> </tt>
<a name="L1057"></a><tt class="py-lineno">1057</tt>  <tt class="py-line"> </tt>
<a name="initHdrArrayFrom"></a><div id="initHdrArrayFrom-def"><a name="L1058"></a><tt class="py-lineno">1058</tt> <a class="py-toggle" href="#" id="initHdrArrayFrom-toggle" onclick="return toggle('initHdrArrayFrom');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#initHdrArrayFrom">initHdrArrayFrom</a><tt class="py-op">(</tt><tt class="py-param">hdrDest</tt><tt class="py-op">,</tt> <tt class="py-param">hdrSrc</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-comment">#, mode, nxOrShape, ny=None, nz=None):</tt> </tt>
</div><a name="L1059"></a><tt class="py-lineno">1059</tt>  <tt class="py-line">    <tt class="py-docstring">"""copy all field of the header</tt> </tt>
<a name="L1060"></a><tt class="py-lineno">1060</tt>  <tt class="py-line"><tt class="py-docstring">       EXCEPT  shape AND PixelType AND all fields related to extended hdr</tt> </tt>
<a name="L1061"></a><tt class="py-lineno">1061</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L1062"></a><tt class="py-lineno">1062</tt>  <tt class="py-line">     </tt>
<a name="L1063"></a><tt class="py-lineno">1063</tt>  <tt class="py-line">    <tt class="py-string">'''</tt> </tt>
<a name="L1064"></a><tt class="py-lineno">1064</tt>  <tt class="py-line"><tt class="py-string">    if ny is nz is None:</tt> </tt>
<a name="L1065"></a><tt class="py-lineno">1065</tt>  <tt class="py-line"><tt class="py-string">        if len(nxOrShape) == 2:</tt> </tt>
<a name="L1066"></a><tt class="py-lineno">1066</tt>  <tt class="py-line"><tt class="py-string">            nz,(ny,nx)  = 1, nxOrShape</tt> </tt>
<a name="L1067"></a><tt class="py-lineno">1067</tt>  <tt class="py-line"><tt class="py-string">        elif len(nxOrShape) == 1:</tt> </tt>
<a name="L1068"></a><tt class="py-lineno">1068</tt>  <tt class="py-line"><tt class="py-string">            nz,ny,nx  = 1, 1, nxOrShape</tt> </tt>
<a name="L1069"></a><tt class="py-lineno">1069</tt>  <tt class="py-line"><tt class="py-string">        elif len(nxOrShape) == 3:</tt> </tt>
<a name="L1070"></a><tt class="py-lineno">1070</tt>  <tt class="py-line"><tt class="py-string">            nz,ny,nx  = nxOrShape</tt> </tt>
<a name="L1071"></a><tt class="py-lineno">1071</tt>  <tt class="py-line"><tt class="py-string">        else:</tt> </tt>
<a name="L1072"></a><tt class="py-lineno">1072</tt>  <tt class="py-line"><tt class="py-string">            ny,nx  = nxOrShape[-2:]</tt> </tt>
<a name="L1073"></a><tt class="py-lineno">1073</tt>  <tt class="py-line"><tt class="py-string">            nz     = N.prod(nxOrShape[:-2])</tt> </tt>
<a name="L1074"></a><tt class="py-lineno">1074</tt>  <tt class="py-line"><tt class="py-string">            </tt> </tt>
<a name="L1075"></a><tt class="py-lineno">1075</tt>  <tt class="py-line"><tt class="py-string">    else:</tt> </tt>
<a name="L1076"></a><tt class="py-lineno">1076</tt>  <tt class="py-line"><tt class="py-string">        nx = nxOrShape</tt> </tt>
<a name="L1077"></a><tt class="py-lineno">1077</tt>  <tt class="py-line"><tt class="py-string">    '''</tt> </tt>
<a name="L1078"></a><tt class="py-lineno">1078</tt>  <tt class="py-line">    <tt class="py-comment">#  hdrDest.PixelType = .hdr.PixelType</tt> </tt>
<a name="L1079"></a><tt class="py-lineno">1079</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">mst</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">mst</tt> </tt>
<a name="L1080"></a><tt class="py-lineno">1080</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">m</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">m</tt> </tt>
<a name="L1081"></a><tt class="py-lineno">1081</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">d</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">d</tt> </tt>
<a name="L1082"></a><tt class="py-lineno">1082</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">angle</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">angle</tt> </tt>
<a name="L1083"></a><tt class="py-lineno">1083</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt id="link-230" class="py-name"><a title="Priithon.plt.interface.axis
Priithon.plt.wxplt.plot_canvas.axis" class="py-name" href="#" onclick="return doclink('link-230', 'axis', 'link-228');">axis</a></tt> <tt class="py-op">=</tt>  <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt id="link-231" class="py-name"><a title="Priithon.plt.interface.axis
Priithon.plt.wxplt.plot_canvas.axis" class="py-name" href="#" onclick="return doclink('link-231', 'axis', 'link-228');">axis</a></tt> </tt>
<a name="L1084"></a><tt class="py-lineno">1084</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">mmm1</tt> <tt class="py-op">=</tt>  <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">mmm1</tt> </tt>
<a name="L1085"></a><tt class="py-lineno">1085</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> <tt class="py-op">=</tt>  <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> </tt>
<a name="L1086"></a><tt class="py-lineno">1086</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">nspg</tt> <tt class="py-op">=</tt>  <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">nspg</tt> </tt>
<a name="L1087"></a><tt class="py-lineno">1087</tt>  <tt class="py-line">    <tt class="py-comment">#   hdrDest.next =  hdrSrc.next</tt> </tt>
<a name="L1088"></a><tt class="py-lineno">1088</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">next</tt> <tt class="py-op">=</tt>          <tt class="py-number">0</tt> </tt>
<a name="L1089"></a><tt class="py-lineno">1089</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">dvid</tt> <tt class="py-op">=</tt>  <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">dvid</tt> </tt>
<a name="L1090"></a><tt class="py-lineno">1090</tt>  <tt class="py-line">    <tt class="py-comment">#20090402 hdrDest.blank = hdrSrc.blank</tt> </tt>
<a name="L1091"></a><tt class="py-lineno">1091</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">nblank</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">nblank</tt>   <tt class="py-comment">#20090402</tt> </tt>
<a name="L1092"></a><tt class="py-lineno">1092</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">ntst</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">ntst</tt>       <tt class="py-comment">#20090402</tt> </tt>
<a name="L1093"></a><tt class="py-lineno">1093</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">extra</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">extra</tt>      <tt class="py-comment">#20090402</tt> </tt>
<a name="L1094"></a><tt class="py-lineno">1094</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">NumIntegers</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> <tt class="py-comment">#hdrSrc.NumIntegers</tt> </tt>
<a name="L1095"></a><tt class="py-lineno">1095</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">NumFloats</tt> <tt class="py-op">=</tt>   <tt class="py-number">0</tt> <tt class="py-comment">#hdrSrc.NumFloats</tt> </tt>
<a name="L1096"></a><tt class="py-lineno">1096</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">sub</tt> <tt class="py-op">=</tt>         <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">sub</tt> </tt>
<a name="L1097"></a><tt class="py-lineno">1097</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">zfac</tt> <tt class="py-op">=</tt>        <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">zfac</tt> </tt>
<a name="L1098"></a><tt class="py-lineno">1098</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">mm2</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">mm2</tt> </tt>
<a name="L1099"></a><tt class="py-lineno">1099</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">mm3</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">mm3</tt> </tt>
<a name="L1100"></a><tt class="py-lineno">1100</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">mm4</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">mm4</tt> </tt>
<a name="L1101"></a><tt class="py-lineno">1101</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">ImageType</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">ImageType</tt> </tt>
<a name="L1102"></a><tt class="py-lineno">1102</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">LensNum</tt> <tt class="py-op">=</tt>   <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">LensNum</tt> </tt>
<a name="L1103"></a><tt class="py-lineno">1103</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">n1</tt> <tt class="py-op">=</tt>        <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">n1</tt> </tt>
<a name="L1104"></a><tt class="py-lineno">1104</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">n2</tt> <tt class="py-op">=</tt>        <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">n2</tt> </tt>
<a name="L1105"></a><tt class="py-lineno">1105</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">v1</tt> <tt class="py-op">=</tt>        <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">v1</tt> </tt>
<a name="L1106"></a><tt class="py-lineno">1106</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">v2</tt> <tt class="py-op">=</tt>        <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">v2</tt> </tt>
<a name="L1107"></a><tt class="py-lineno">1107</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">mm5</tt> <tt class="py-op">=</tt>       <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">mm5</tt> </tt>
<a name="L1108"></a><tt class="py-lineno">1108</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt> <tt class="py-op">=</tt>  <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">NumTimes</tt> </tt>
<a name="L1109"></a><tt class="py-lineno">1109</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">ImgSequence</tt> </tt>
<a name="L1110"></a><tt class="py-lineno">1110</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">tilt</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">tilt</tt> </tt>
<a name="L1111"></a><tt class="py-lineno">1111</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">NumWaves</tt> </tt>
<a name="L1112"></a><tt class="py-lineno">1112</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">wave</tt> <tt class="py-op">=</tt>     <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">wave</tt> </tt>
<a name="L1113"></a><tt class="py-lineno">1113</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">zxy0</tt> <tt class="py-op">=</tt>     <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">zxy0</tt> </tt>
<a name="L1114"></a><tt class="py-lineno">1114</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt> </tt>
<a name="L1115"></a><tt class="py-lineno">1115</tt>  <tt class="py-line">    <tt class="py-name">hdrDest</tt><tt class="py-op">.</tt><tt id="link-232" class="py-name"><a title="Priithon.plt.interface.title
Priithon.plt.wxplt.plot_frame.title" class="py-name" href="#" onclick="return doclink('link-232', 'title', 'link-225');">title</a></tt> <tt class="py-op">=</tt> <tt class="py-name">hdrSrc</tt><tt class="py-op">.</tt><tt id="link-233" class="py-name"><a title="Priithon.plt.interface.title
Priithon.plt.wxplt.plot_frame.title" class="py-name" href="#" onclick="return doclink('link-233', 'title', 'link-225');">title</a></tt> </tt>
</div><a name="L1116"></a><tt class="py-lineno">1116</tt>  <tt class="py-line"> </tt>
<a name="setTitle"></a><div id="setTitle-def"><a name="L1117"></a><tt class="py-lineno">1117</tt> <a class="py-toggle" href="#" id="setTitle-toggle" onclick="return toggle('setTitle');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Priithon.Mrc-module.html#setTitle">setTitle</a><tt class="py-op">(</tt><tt class="py-param">hdr</tt><tt class="py-op">,</tt> <tt class="py-param">s</tt><tt class="py-op">,</tt> <tt class="py-param">i</tt><tt class="py-op">=</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="setTitle-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="setTitle-expanded"><a name="L1118"></a><tt class="py-lineno">1118</tt>  <tt class="py-line">    <tt class="py-docstring">"""set title i (i==-1 means "append") to s"""</tt> </tt>
<a name="L1119"></a><tt class="py-lineno">1119</tt>  <tt class="py-line"> </tt>
<a name="L1120"></a><tt class="py-lineno">1120</tt>  <tt class="py-line">    <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt> </tt>
<a name="L1121"></a><tt class="py-lineno">1121</tt>  <tt class="py-line"> </tt>
<a name="L1122"></a><tt class="py-lineno">1122</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-234" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-234', 'i', 'link-50');">i</a></tt> <tt class="py-op">&lt;</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L1123"></a><tt class="py-lineno">1123</tt>  <tt class="py-line">        <tt id="link-235" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-235', 'i', 'link-50');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-name">n</tt> </tt>
<a name="L1124"></a><tt class="py-lineno">1124</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-236" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-236', 'i', 'link-50');">i</a></tt><tt class="py-op">&gt;</tt><tt class="py-number">9</tt><tt class="py-op">:</tt> </tt>
<a name="L1125"></a><tt class="py-lineno">1125</tt>  <tt class="py-line">        <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"Mrc only support up to 10 titles (0&lt;=i&lt;10)"</tt> </tt>
<a name="L1126"></a><tt class="py-lineno">1126</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">s</tt><tt class="py-op">)</tt> <tt class="py-op">&gt;</tt> <tt class="py-number">80</tt><tt class="py-op">:</tt> </tt>
<a name="L1127"></a><tt class="py-lineno">1127</tt>  <tt class="py-line">        <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"Mrc only support title up to 80 characters"</tt> </tt>
<a name="L1128"></a><tt class="py-lineno">1128</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt id="link-237" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-237', 'i', 'link-50');">i</a></tt><tt class="py-op">&gt;=</tt><tt class="py-name">n</tt><tt class="py-op">:</tt> </tt>
<a name="L1129"></a><tt class="py-lineno">1129</tt>  <tt class="py-line">        <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">NumTitles</tt> <tt class="py-op">=</tt> <tt id="link-238" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-238', 'i', 'link-50');">i</a></tt><tt class="py-op">+</tt><tt class="py-number">1</tt> </tt>
<a name="L1130"></a><tt class="py-lineno">1130</tt>  <tt class="py-line"> </tt>
<a name="L1131"></a><tt class="py-lineno">1131</tt>  <tt class="py-line">    <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">s</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">80</tt><tt class="py-op">:</tt> </tt>
<a name="L1132"></a><tt class="py-lineno">1132</tt>  <tt class="py-line">        <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt id="link-239" class="py-name"><a title="Priithon.plt.interface.title
Priithon.plt.wxplt.plot_frame.title" class="py-name" href="#" onclick="return doclink('link-239', 'title', 'link-225');">title</a></tt><tt class="py-op">[</tt><tt id="link-240" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-240', 'i', 'link-50');">i</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">s</tt> </tt>
<a name="L1133"></a><tt class="py-lineno">1133</tt>  <tt class="py-line">    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L1134"></a><tt class="py-lineno">1134</tt>  <tt class="py-line">        <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt id="link-241" class="py-name"><a title="Priithon.plt.interface.title
Priithon.plt.wxplt.plot_frame.title" class="py-name" href="#" onclick="return doclink('link-241', 'title', 'link-225');">title</a></tt><tt class="py-op">[</tt><tt id="link-242" class="py-name"><a title="Priithon.viewer.i
Priithon.viewer2.i
Priithon.viewerCommon.i" class="py-name" href="#" onclick="return doclink('link-242', 'i', 'link-50');">i</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">s</tt><tt class="py-op">+</tt><tt class="py-string">'\0'</tt> </tt>
</div><a name="L1135"></a><tt class="py-lineno">1135</tt>  <tt class="py-line">     </tt>
<a name="L1136"></a><tt class="py-lineno">1136</tt>  <tt class="py-line"> </tt>
<a name="L1137"></a><tt class="py-lineno">1137</tt>  <tt class="py-line"> </tt>
<a name="L1138"></a><tt class="py-lineno">1138</tt>  <tt class="py-line"><tt class="py-name">mrcHdrFields</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
<a name="L1139"></a><tt class="py-lineno">1139</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3i4'</tt><tt class="py-op">,</tt> <tt class="py-string">'Num'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>   <tt class="py-comment"># (nx,ny,nSecs)</tt> </tt>
<a name="L1140"></a><tt class="py-lineno">1140</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i4'</tt><tt class="py-op">,</tt> <tt class="py-string">'PixelType'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1141"></a><tt class="py-lineno">1141</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3i4'</tt><tt class="py-op">,</tt> <tt class="py-string">'mst'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1142"></a><tt class="py-lineno">1142</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3i4'</tt><tt class="py-op">,</tt> <tt class="py-string">'m'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1143"></a><tt class="py-lineno">1143</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1144"></a><tt class="py-lineno">1144</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'angle'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1145"></a><tt class="py-lineno">1145</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3i4'</tt><tt class="py-op">,</tt> <tt class="py-string">'axis'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1146"></a><tt class="py-lineno">1146</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'mmm1'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1147"></a><tt class="py-lineno">1147</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'type'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1148"></a><tt class="py-lineno">1148</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'nspg'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1149"></a><tt class="py-lineno">1149</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i4'</tt><tt class="py-op">,</tt> <tt class="py-string">'next'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1150"></a><tt class="py-lineno">1150</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'dvid'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1151"></a><tt class="py-lineno">1151</tt>  <tt class="py-line"><tt class="py-comment">#20090402    ('30i1', 'blank'),</tt> </tt>
<a name="L1152"></a><tt class="py-lineno">1152</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'nblank'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1153"></a><tt class="py-lineno">1153</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i4'</tt><tt class="py-op">,</tt> <tt class="py-string">'ntst'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>     </tt>
<a name="L1154"></a><tt class="py-lineno">1154</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'24u1'</tt><tt class="py-op">,</tt> <tt class="py-string">'extra'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1155"></a><tt class="py-lineno">1155</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'NumIntegers'</tt><tt class="py-op">,</tt> <tt class="py-string">'Number of 4 byte integers stored in the extended header per section. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1156"></a><tt class="py-lineno">1156</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'NumFloats'</tt><tt class="py-op">,</tt> <tt class="py-string">'Number of 4 byte floating-point numbers stored in the extended header per section. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1157"></a><tt class="py-lineno">1157</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'sub'</tt><tt class="py-op">,</tt> <tt class="py-string">'Number of sub-resolution data sets stored within the image. Typically, this equals 1. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1158"></a><tt class="py-lineno">1158</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'zfac'</tt><tt class="py-op">,</tt> <tt class="py-string">'Reduction quotient for the z axis of the sub-resolution images. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1159"></a><tt class="py-lineno">1159</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'2f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'mm2'</tt><tt class="py-op">,</tt> <tt class="py-string">'Minimum intensity of the 2nd wavelength image. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1160"></a><tt class="py-lineno">1160</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'2f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'mm3'</tt><tt class="py-op">,</tt> <tt class="py-string">'Minimum intensity of the 2nd wavelength image. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1161"></a><tt class="py-lineno">1161</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'2f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'mm4'</tt><tt class="py-op">,</tt> <tt class="py-string">'Minimum intensity of the 2nd wavelength image. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1162"></a><tt class="py-lineno">1162</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'ImageType'</tt><tt class="py-op">,</tt> <tt class="py-string">'Image type. See Image Type table below. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1163"></a><tt class="py-lineno">1163</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'LensNum'</tt><tt class="py-op">,</tt> <tt class="py-string">'Lens identification number.'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1164"></a><tt class="py-lineno">1164</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'n1'</tt><tt class="py-op">,</tt> <tt class="py-string">'Depends on the image type.'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1165"></a><tt class="py-lineno">1165</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'n2'</tt><tt class="py-op">,</tt> <tt class="py-string">'Depends on the image type.'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1166"></a><tt class="py-lineno">1166</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'v1'</tt><tt class="py-op">,</tt> <tt class="py-string">'Depends on the image type. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1167"></a><tt class="py-lineno">1167</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'v2'</tt><tt class="py-op">,</tt> <tt class="py-string">'Depends on the image type. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1168"></a><tt class="py-lineno">1168</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'2f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'mm5'</tt><tt class="py-op">,</tt> <tt class="py-string">'Minimum intensity of the 2nd wavelength image. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1169"></a><tt class="py-lineno">1169</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'NumTimes'</tt><tt class="py-op">,</tt> <tt class="py-string">'Number of time points.'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1170"></a><tt class="py-lineno">1170</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'ImgSequence'</tt><tt class="py-op">,</tt> <tt class="py-string">'Image sequence. 0=ZTW, 1=WZT, 2=ZWT. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1171"></a><tt class="py-lineno">1171</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'tilt'</tt><tt class="py-op">,</tt> <tt class="py-string">'X axis tilt angle (degrees). '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1172"></a><tt class="py-lineno">1172</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'NumWaves'</tt><tt class="py-op">,</tt> <tt class="py-string">'Number of wavelengths.'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1173"></a><tt class="py-lineno">1173</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'5i2'</tt><tt class="py-op">,</tt> <tt class="py-string">'wave'</tt><tt class="py-op">,</tt> <tt class="py-string">'Wavelength 1, in nm.'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1174"></a><tt class="py-lineno">1174</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'3f4'</tt><tt class="py-op">,</tt> <tt class="py-string">'zxy0'</tt><tt class="py-op">,</tt> <tt class="py-string">'X origin, in um.'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>   <tt class="py-comment"># 20050920  ## fixed: order is z,x,y NOT x,y,z</tt> </tt>
<a name="L1175"></a><tt class="py-lineno">1175</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'1i4'</tt><tt class="py-op">,</tt> <tt class="py-string">'NumTitles'</tt><tt class="py-op">,</tt> <tt class="py-string">'Number of titles. Valid numbers are between 0 and 10. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1176"></a><tt class="py-lineno">1176</tt>  <tt class="py-line">    <tt class="py-op">(</tt><tt class="py-string">'10a80'</tt><tt class="py-op">,</tt> <tt class="py-string">'title'</tt><tt class="py-op">,</tt> <tt class="py-string">'Title 1. 80 characters long. '</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L1177"></a><tt class="py-lineno">1177</tt>  <tt class="py-line"><tt class="py-op">]</tt> </tt>
<a name="L1178"></a><tt class="py-lineno">1178</tt>  <tt class="py-line"> </tt>
<a name="L1179"></a><tt class="py-lineno">1179</tt>  <tt class="py-line"><tt id="link-243" class="py-name"><a title="Priithon.Mrc.mrcHdrNames" class="py-name" href="#" onclick="return doclink('link-243', 'mrcHdrNames', 'link-206');">mrcHdrNames</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L1180"></a><tt class="py-lineno">1180</tt>  <tt class="py-line"><tt id="link-244" class="py-name" targets="Variable Priithon.Mrc.mrcHdrFormats=Priithon.Mrc-module.html#mrcHdrFormats"><a title="Priithon.Mrc.mrcHdrFormats" class="py-name" href="#" onclick="return doclink('link-244', 'mrcHdrFormats', 'link-244');">mrcHdrFormats</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L1181"></a><tt class="py-lineno">1181</tt>  <tt class="py-line"><tt class="py-keyword">for</tt> <tt class="py-name">ff</tt> <tt class="py-keyword">in</tt> <tt class="py-name">mrcHdrFields</tt><tt class="py-op">:</tt> </tt>
<a name="L1182"></a><tt class="py-lineno">1182</tt>  <tt class="py-line">    <tt id="link-245" class="py-name"><a title="Priithon.Mrc.mrcHdrFormats" class="py-name" href="#" onclick="return doclink('link-245', 'mrcHdrFormats', 'link-244');">mrcHdrFormats</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">ff</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L1183"></a><tt class="py-lineno">1183</tt>  <tt class="py-line">    <tt id="link-246" class="py-name"><a title="Priithon.Mrc.mrcHdrNames" class="py-name" href="#" onclick="return doclink('link-246', 'mrcHdrNames', 'link-206');">mrcHdrNames</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">ff</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L1184"></a><tt class="py-lineno">1184</tt>  <tt class="py-line"><tt class="py-keyword">del</tt> <tt class="py-name">ff</tt> </tt>
<a name="L1185"></a><tt class="py-lineno">1185</tt>  <tt class="py-line"><tt class="py-keyword">del</tt> <tt class="py-name">mrcHdrFields</tt> </tt>
<a name="L1186"></a><tt class="py-lineno">1186</tt>  <tt class="py-line"><tt id="link-247" class="py-name"><a title="Priithon.Mrc.mrcHdr_dtype" class="py-name" href="#" onclick="return doclink('link-247', 'mrcHdr_dtype', 'link-146');">mrcHdr_dtype</a></tt> <tt class="py-op">=</tt> <tt class="py-name">zip</tt><tt class="py-op">(</tt><tt id="link-248" class="py-name"><a title="Priithon.Mrc.mrcHdrNames" class="py-name" href="#" onclick="return doclink('link-248', 'mrcHdrNames', 'link-206');">mrcHdrNames</a></tt><tt class="py-op">,</tt> <tt id="link-249" class="py-name"><a title="Priithon.Mrc.mrcHdrFormats" class="py-name" href="#" onclick="return doclink('link-249', 'mrcHdrFormats', 'link-244');">mrcHdrFormats</a></tt><tt class="py-op">)</tt> </tt>
<a name="L1187"></a><tt class="py-lineno">1187</tt>  <tt class="py-line"> </tt><script type="text/javascript">
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